Literature DB >> 19113834

Protein nuclear magnetic resonance under physiological conditions.

Gary J Pielak1, Conggang Li, Andrew C Miklos, Alexander P Schlesinger, Kristin M Slade, Gui-Fang Wang, Imola G Zigoneanu.   

Abstract

Almost everything we know about protein biophysics comes from studies on purified proteins in dilute solution. Most proteins, however, operate inside cells where the concentration of macromolecules can be >300 mg/mL. Although reductionism-based approaches have served protein science well for more than a century, biochemists now have the tools to study proteins under these more physiologically relevant conditions. We review a part of this burgeoning postreductionist landscape by focusing on high-resolution protein nuclear magnetic resonance (NMR) spectroscopy, the only method that provides atomic-level information over an entire protein under the crowded conditions found in cells.

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Year:  2009        PMID: 19113834      PMCID: PMC2645539          DOI: 10.1021/bi8018948

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  89 in total

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4.  Residue-level interrogation of macromolecular crowding effects on protein stability.

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5.  Guiding protein aggregation with macromolecular crowding.

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6.  Hydrogen exchange of monomeric alpha-synuclein shows unfolded structure persists at physiological temperature and is independent of molecular crowding in Escherichia coli.

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7.  Differential dynamical effects of macromolecular crowding on an intrinsically disordered protein and a globular protein: implications for in-cell NMR spectroscopy.

Authors:  Conggang Li; Lisa M Charlton; Asha Lakkavaram; Christopher Seagle; Guifang Wang; Gregory B Young; Jeffrey M Macdonald; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2008-04-18       Impact factor: 15.419

8.  NMR observation of Tau in Xenopus oocytes.

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9.  Native conformation at specific residues in recombinant inclusion body protein in whole cells determined with solid-state NMR spectroscopy.

Authors:  Jaime Curtis-Fisk; Ryan M Spencer; David P Weliky
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Journal:  PLoS One       Date:  2008-07-02       Impact factor: 3.240

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  31 in total

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3.  Impact of reconstituted cytosol on protein stability.

Authors:  Mohona Sarkar; Austin E Smith; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

4.  Specific ion effects on macromolecular interactions in Escherichia coli extracts.

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5.  Intrinsic site-selectivity of ubiquitin dimer formation.

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6.  Controlling and quantifying protein concentration in Escherichia coli.

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7.  Characterization of proteins by in-cell NMR spectroscopy in cultured mammalian cells.

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Journal:  Nat Protoc       Date:  2016-05-19       Impact factor: 13.491

8.  Protein (19)F NMR in Escherichia coli.

Authors:  Conggang Li; Gui-Fang Wang; Yaqiang Wang; Rachel Creager-Allen; Evan A Lutz; Heidi Scronce; Kristin M Slade; Rebecca A S Ruf; Ryan A Mehl; Gary J Pielak
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9.  Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm.

Authors:  Sean R McGuffee; Adrian H Elcock
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

10.  Method to Predict Crowding Effects by Postprocessing Molecular Dynamics Trajectories: Application to the Flap Dynamics of HIV-1 Protease.

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Journal:  J Phys Chem Lett       Date:  2009-11-09       Impact factor: 6.475

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