Literature DB >> 31128785

Improved sensitivity and resolution of in-cell NMR spectra.

David S Burz1, Leonard Breindel1, Alexander Shekhtman2.   

Abstract

In-cell NMR spectroscopy is a powerful tool to study protein structures and interactions under near physiological conditions in both prokaryotic and eukaryotic living cells. The low sensitivity and resolution of in-cell NMR spectra and limited lifetime of cells over the course of an in-cell experiment have presented major hurdles to wide acceptance of the technique, limiting it to a few select systems. These issues are addressed by introducing the use of the CRINEPT pulse sequence to increase the sensitivity and resolution of in-cell NMR spectra and the use of a bioreactor to maintain cell viability for up to 24h. Application of advanced pulse sequences and bioreactor during in-cell NMR experiments will facilitate the exploration of a wide range of biological processes.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Antibiotics; Atomic resolution structure; In vivo biochemistry; In-cell biochemistry; Nucleic acids; Protein interactions; Protein structure; Protein-drug interactions; RNA; Ribosome; Thioredoxin

Mesh:

Substances:

Year:  2019        PMID: 31128785      PMCID: PMC6988085          DOI: 10.1016/bs.mie.2019.02.029

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  54 in total

1.  NMR structure determination and investigation using a reduced proton (REDPRO) labeling strategy for proteins.

Authors:  Alexander Shekhtman; Ranajeet Ghose; Michael Goger; David Cowburn
Journal:  FEBS Lett       Date:  2002-07-31       Impact factor: 4.124

2.  Molecular crowding drives active Pin1 into nonspecific complexes with endogenous proteins prior to substrate recognition.

Authors:  Laura M Luh; Robert Hänsel; Frank Löhr; Donata K Kirchner; Katharina Krauskopf; Susanne Pitzius; Birgit Schäfer; Peter Tufar; Ivan Corbeski; Peter Güntert; Volker Dötsch
Journal:  J Am Chem Soc       Date:  2013-09-06       Impact factor: 15.419

3.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

4.  Real-Time In-Cell Nuclear Magnetic Resonance: Ribosome-Targeted Antibiotics Modulate Quinary Protein Interactions.

Authors:  Leonard Breindel; Christopher DeMott; David S Burz; Alexander Shekhtman
Journal:  Biochemistry       Date:  2018-01-08       Impact factor: 3.162

5.  Total Cellular RNA Modulates Protein Activity.

Authors:  Subhabrata Majumder; Christopher M DeMott; Sergey Reverdatto; David S Burz; Alexander Shekhtman
Journal:  Biochemistry       Date:  2016-08-03       Impact factor: 3.162

6.  Structural disorder of monomeric α-synuclein persists in mammalian cells.

Authors:  Francois-Xavier Theillet; Andres Binolfi; Beata Bekei; Andrea Martorana; Honor May Rose; Marchel Stuiver; Silvia Verzini; Dorothea Lorenz; Marleen van Rossum; Daniella Goldfarb; Philipp Selenko
Journal:  Nature       Date:  2016-01-25       Impact factor: 49.962

7.  Quantitative Determination of Interacting Protein Surfaces in Prokaryotes and Eukaryotes by Using In-Cell NMR Spectroscopy.

Authors:  David S Burz; Christopher M DeMott; Asma Aldousary; Stephen Dansereau; Alexander Shekhtman
Journal:  Methods Mol Biol       Date:  2018

8.  Protein nuclear magnetic resonance under physiological conditions.

Authors:  Gary J Pielak; Conggang Li; Andrew C Miklos; Alexander P Schlesinger; Kristin M Slade; Gui-Fang Wang; Imola G Zigoneanu
Journal:  Biochemistry       Date:  2009-01-20       Impact factor: 3.162

9.  A bioreactor for in-cell protein NMR.

Authors:  Naima G Sharaf; Christopher O Barnes; Lisa M Charlton; Gregory B Young; Gary J Pielak
Journal:  J Magn Reson       Date:  2009-10-23       Impact factor: 2.229

10.  Using singular value decomposition to characterize protein-protein interactions by in-cell NMR spectroscopy.

Authors:  Subhabrata Majumder; Christopher M DeMott; David S Burz; Alexander Shekhtman
Journal:  Chembiochem       Date:  2014-04-01       Impact factor: 3.164

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  2 in total

1.  Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy.

Authors:  Daniel Krafčík; Eva Ištvánková; Šimon Džatko; Pavlína Víšková; Silvie Foldynová-Trantírková; Lukáš Trantírek
Journal:  Int J Mol Sci       Date:  2021-06-03       Impact factor: 5.923

2.  Determination of intracellular protein-ligand binding affinity by competition binding in-cell NMR.

Authors:  Enrico Luchinat; Letizia Barbieri; Matteo Cremonini; Matteo Pennestri; Alessio Nocentini; Claudiu T Supuran; Lucia Banci
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-09-27       Impact factor: 7.652

  2 in total

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