Literature DB >> 24914168

Time-resolved crystallography and protein design: signalling photoreceptors and optogenetics.

Keith Moffat1.   

Abstract

Time-resolved X-ray crystallography and solution scattering have been successfully conducted on proteins on time-scales down to around 100 ps, set by the duration of the hard X-ray pulses emitted by synchrotron sources. The advent of hard X-ray free-electron lasers (FELs), which emit extremely intense, very brief, coherent X-ray pulses, opens the exciting possibility of time-resolved experiments with femtosecond time resolution on macromolecular structure, in both single crystals and solution. The X-ray pulses emitted by an FEL differ greatly in many properties from those emitted by a synchrotron, in ways that at first glance make time-resolved measurements of X-ray scattering with the required accuracy extremely challenging. This opens up several questions which I consider in this brief overview. Are there likely to be chemically and biologically interesting structural changes to be revealed on the femtosecond time-scale? How shall time-resolved experiments best be designed and conducted to exploit the properties of FELs and overcome challenges that they pose? To date, fast time-resolved reactions have been initiated by a brief laser pulse, which obviously requires that the system under study be light-sensitive. Although this is true for proteins of the visual system and for signalling photoreceptors, it is not naturally the case for most interesting biological systems. To generate more biological targets for time-resolved study, can this limitation be overcome by optogenetic, chemical or other means?
© 2014 The Author(s) Published by the Royal Society. All rights reserved.

Keywords:  crystallography; free-electron lasers; optogenetics; reaction initiation; solution scattering; time-resolved X-ray scattering

Mesh:

Substances:

Year:  2014        PMID: 24914168      PMCID: PMC4052877          DOI: 10.1098/rstb.2013.0568

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  29 in total

Review 1.  Time-resolved biochemical crystallography: a mechanistic perspective.

Authors:  K Moffat
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  A molecular movie at 1.8 A resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds.

Authors:  Z Ren; B Perman; V Srajer; T Y Teng; C Pradervand; D Bourgeois; F Schotte; T Ursby; R Kort; M Wulff; K Moffat
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

3.  Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch.

Authors:  Sean Crosson; Keith Moffat
Journal:  Plant Cell       Date:  2002-05       Impact factor: 11.277

4.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

5.  Contradictions in X-ray structures of intermediates in the photocycle of photoactive yellow protein.

Authors:  Ville R I Kaila; Friedrich Schotte; Hyun Sun Cho; Gerhard Hummer; Philip A Anfinrud
Journal:  Nat Chem       Date:  2014-04       Impact factor: 24.427

6.  Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Authors:  Marco Cammarata; Matteo Levantino; Friedrich Schotte; Philip A Anfinrud; Friederike Ewald; Jungkweon Choi; Antonio Cupane; Michael Wulff; Hyotcherl Ihee
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

7.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals.

Authors:  Richard A Kirian; Thomas A White; James M Holton; Henry N Chapman; Petra Fromme; Anton Barty; Lukas Lomb; Andrew Aquila; Filipe R N C Maia; Andrew V Martin; Raimund Fromme; Xiaoyu Wang; Mark S Hunter; Kevin E Schmidt; John C H Spence
Journal:  Acta Crystallogr A       Date:  2011-02-16       Impact factor: 2.290

9.  Visualizing solution-phase reaction dynamics with time-resolved X-ray liquidography.

Authors:  Hyotcherl Ihee
Journal:  Acc Chem Res       Date:  2009-02-17       Impact factor: 22.384

10.  Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography.

Authors:  Yang Ouk Jung; Jae Hyuk Lee; Joonghan Kim; Marius Schmidt; Keith Moffat; Vukica Srajer; Hyotcherl Ihee
Journal:  Nat Chem       Date:  2013-02-03       Impact factor: 24.427

View more
  14 in total

1.  In situ serial Laue diffraction on a microfluidic crystallization device.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Robert Henning; Irina Kosheleva; Vukica Srajer; Paul J A Kenis; Zhong Ren
Journal:  J Appl Crystallogr       Date:  2014-11-18       Impact factor: 3.304

2.  Towards time-resolved serial crystallography in a microfluidic device.

Authors:  Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

Review 3.  Diffraction Techniques in Structural Biology.

Authors:  Martin Egli
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2016-06-01

4.  The birth of a new field.

Authors:  John C H Spence; Henry N Chapman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 5.  The complementarity of serial femtosecond crystallography and MicroED for structure determination from microcrystals.

Authors:  Nadia A Zatsepin; Chufeng Li; Paige Colasurd; Brent L Nannenga
Journal:  Curr Opin Struct Biol       Date:  2019-07-22       Impact factor: 6.809

6.  Blue protein with red fluorescence.

Authors:  Swagatha Ghosh; Chi-Li Yu; Daniel J Ferraro; Sai Sudha; Samir Kumar Pal; Wayne F Schaefer; David T Gibson; S Ramaswamy
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-29       Impact factor: 11.205

7.  Molecular Dynamics Simulations of Macromolecular Crystals.

Authors:  David S Cerutti; David A Case
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-11-16

8.  Double-focusing mixing jet for XFEL study of chemical kinetics.

Authors:  Dingjie Wang; Uwe Weierstall; Lois Pollack; John Spence
Journal:  J Synchrotron Radiat       Date:  2014-10-07       Impact factor: 2.616

9.  Imaging enzyme kinetics at atomic resolution.

Authors:  John Spence; Eaton Lattman
Journal:  IUCrJ       Date:  2016-06-27       Impact factor: 4.769

10.  Ligand and interfacial dynamics in a homodimeric hemoglobin.

Authors:  Prashant Kumar Gupta; Markus Meuwly
Journal:  Struct Dyn       Date:  2016-02-17       Impact factor: 2.920

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.