Literature DB >> 24651178

Contradictions in X-ray structures of intermediates in the photocycle of photoactive yellow protein.

Ville R I Kaila1, Friedrich Schotte2, Hyun Sun Cho2, Gerhard Hummer3, Philip A Anfinrud2.   

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Year:  2014        PMID： 24651178      PMCID： PMC4217633          DOI： 10.1038/nchem.1898

Source DB:  PubMed          Journal:  Nat Chem        ISSN： 1755-4330            Impact factor:   24.427


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  8 in total

1.  Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy.

Authors:  Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Michael A van Der Horst; Frank L de Weerd; Klaas J Hellingwerf; Rienk van Grondelle
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  Initial events in the photocycle of photoactive yellow protein.

Authors:  Remco Kort; Klaas J Hellingwerf; Raimond B G Ravelli
Journal:  J Biol Chem       Date:  2004-03-16       Impact factor: 5.157

3.  Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.

Authors:  Hyotcherl Ihee; Sudarshan Rajagopal; Vukica Srajer; Reinhard Pahl; Spencer Anderson; Marius Schmidt; Friedrich Schotte; Philip A Anfinrud; Michael Wulff; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

4.  Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations.

Authors:  H Lee Woodcock; Milan Hodošček; Andrew T B Gilbert; Peter M W Gill; Henry F Schaefer; Bernard R Brooks
Journal:  J Comput Chem       Date:  2007-07-15       Impact factor: 3.376

5.  Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis Isomerization of the chromophore in the protein.

Authors:  Gerrit Groenhof; Mathieu Bouxin-Cademartory; Berk Hess; Sam P De Visser; Herman J C Berendsen; Massimo Olivucci; Alan E Mark; Michael A Robb
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

6.  Short hydrogen bonds in photoactive yellow protein.

Authors:  Spencer Anderson; Sean Crosson; Keith Moffat
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-05-21

7.  Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography.

Authors:  Friedrich Schotte; Hyun Sun Cho; Ville R I Kaila; Hironari Kamikubo; Naranbaatar Dashdorj; Eric R Henry; Timothy J Graber; Robert Henning; Michael Wulff; Gerhard Hummer; Mikio Kataoka; Philip A Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-06       Impact factor: 11.205

8.  Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography.

Authors:  Yang Ouk Jung; Jae Hyuk Lee; Joonghan Kim; Marius Schmidt; Keith Moffat; Vukica Srajer; Hyotcherl Ihee
Journal:  Nat Chem       Date:  2013-02-03       Impact factor: 24.427
  8 in total
  9 in total

1.  Reply to 'contradictions in X-ray structures of intermediates in the photocycle of photoactive yellow protein'.

Authors:  Yang Ouk Jung; Jae Hyuk Lee; Joonghan Kim; Marius Schmidt; Keith Moffat; Vukica Šrajer; Hyotcherl Ihee
Journal:  Nat Chem       Date:  2014-04       Impact factor: 24.427

2.  Probing anisotropic structure changes in proteins with picosecond time-resolved small-angle X-ray scattering.

Authors:  Hyun Sun Cho; Friedrich Schotte; Naranbaatar Dashdorj; John Kyndt; Philip A Anfinrud
Journal:  J Phys Chem B       Date:  2013-10-30       Impact factor: 2.991

3.  Probing the early stages of photoreception in photoactive yellow protein with ultrafast time-domain Raman spectroscopy.

Authors:  Hikaru Kuramochi; Satoshi Takeuchi; Kento Yonezawa; Hironari Kamikubo; Mikio Kataoka; Tahei Tahara
Journal:  Nat Chem       Date:  2017-02-06       Impact factor: 24.427

Review 4.  Time-resolved crystallography and protein design: signalling photoreceptors and optogenetics.

Authors:  Keith Moffat
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

Review 5.  A short history of structure based research on the photocycle of photoactive yellow protein.

Authors:  Marius Schmidt
Journal:  Struct Dyn       Date:  2017-01-31       Impact factor: 2.920

6.  Measurements of complex refractive index change of photoactive yellow protein over a wide wavelength range using hyperspectral quantitative phase imaging.

Authors:  KyeoReh Lee; Youngmin Kim; JaeHwang Jung; Hyotcherl Ihee; YongKeun Park
Journal:  Sci Rep       Date:  2018-02-15       Impact factor: 4.379

7.  Direct evidence for hula twist and single-bond rotation photoproducts.

Authors:  Aaron Gerwien; Monika Schildhauer; Stefan Thumser; Peter Mayer; Henry Dube
Journal:  Nat Commun       Date:  2018-06-28       Impact factor: 14.919

8.  An Eight-State Molecular Sequential Switch Featuring a Dual Single-Bond Rotation Photoreaction.

Authors:  Aaron Gerwien; Benjamin Jehle; Marvin Irmler; Peter Mayer; Henry Dube
Journal:  J Am Chem Soc       Date:  2022-02-14       Impact factor: 15.419

9.  Tracking Ultrafast Structural Dynamics by Time-Domain Raman Spectroscopy.

Authors:  Hikaru Kuramochi; Tahei Tahara
Journal:  J Am Chem Soc       Date:  2021-06-07       Impact factor: 16.383
  9 in total

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