Literature DB >> 24889637

Spectroscopic and computational insight into the activation of O2 by the mononuclear Cu center in polysaccharide monooxygenases.

Christian H Kjaergaard1, Munzarin F Qayyum1, Shaun D Wong1, Feng Xu2, Glyn R Hemsworth3, Daniel J Walton3, Nigel A Young4, Gideon J Davies3, Paul H Walton3, Katja Salomon Johansen5, Keith O Hodgson6, Britt Hedman7, Edward I Solomon8.   

Abstract

Strategies for O2 activation by copper enzymes were recently expanded to include mononuclear Cu sites, with the discovery of the copper-dependent polysaccharide monooxygenases, also classified as auxiliary-activity enzymes 9-11 (AA9-11). These enzymes are finding considerable use in industrial biofuel production. Crystal structures of polysaccharide monooxygenases have emerged, but experimental studies are yet to determine the solution structure of the Cu site and how this relates to reactivity. From X-ray absorption near edge structure and extended X-ray absorption fine structure spectroscopies, we observed a change from four-coordinate Cu(II) to three-coordinate Cu(I) of the active site in solution, where three protein-derived nitrogen ligands coordinate the Cu in both redox states, and a labile hydroxide ligand is lost upon reduction. The spectroscopic data allowed for density functional theory calculations of an enzyme active site model, where the optimized Cu(I) and (II) structures were consistent with the experimental data. The O2 reactivity of the Cu(I) site was probed by EPR and stopped-flow absorption spectroscopies, and a rapid one-electron reduction of O2 and regeneration of the resting Cu(II) enzyme were observed. This reactivity was evaluated computationally, and by calibration to Cu-superoxide model complexes, formation of an end-on Cu-AA9-superoxide species was found to be thermodynamically favored. We discuss how this thermodynamically difficult one-electron reduction of O2 is enabled by the unique protein structure where two nitrogen ligands from His1 dictate formation of a T-shaped Cu(I) site, which provides an open coordination position for strong O2 binding with very little reorganization energy.

Entities:  

Keywords:  DFT; X-ray absorption spectroscopy; biofuels; dioxygen activation

Mesh:

Substances:

Year:  2014        PMID: 24889637      PMCID: PMC4066490          DOI: 10.1073/pnas.1408115111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Cleavage of cellulose by a CBM33 protein.

Authors:  Zarah Forsberg; Gustav Vaaje-Kolstad; Bjørge Westereng; Anne C Bunæs; Yngve Stenstrøm; Alasdair MacKenzie; Morten Sørlie; Svein J Horn; Vincent G H Eijsink
Journal:  Protein Sci       Date:  2011-08-08       Impact factor: 6.725

2.  Active site models for the Cu(A) site of peptidylglycine α-hydroxylating monooxygenase and dopamine β-monooxygenase.

Authors:  Atsushi Kunishita; Mehmed Z Ertem; Yuri Okubo; Tetsuro Tano; Hideki Sugimoto; Kei Ohkubo; Nobutaka Fujieda; Shunichi Fukuzumi; Christopher J Cramer; Shinobu Itoh
Journal:  Inorg Chem       Date:  2012-08-21       Impact factor: 5.165

3.  Oxidation of methane by a biological dicopper centre.

Authors:  Ramakrishnan Balasubramanian; Stephen M Smith; Swati Rawat; Liliya A Yatsunyk; Timothy L Stemmler; Amy C Rosenzweig
Journal:  Nature       Date:  2010-04-21       Impact factor: 49.962

4.  Dioxygen binds end-on to mononuclear copper in a precatalytic enzyme complex.

Authors:  Sean T Prigge; Betty A Eipper; Richard E Mains; L Mario Amzel
Journal:  Science       Date:  2004-05-07       Impact factor: 47.728

5.  Evidence that dioxygen and substrate activation are tightly coupled in dopamine beta-monooxygenase. Implications for the reactive oxygen species.

Authors:  John P Evans; Kyunghye Ahn; Judith P Klinman
Journal:  J Biol Chem       Date:  2003-09-09       Impact factor: 5.157

6.  Isotopic probing of molecular oxygen activation at copper(I) sites.

Authors:  Michael P Lanci; Valeriy V Smirnov; Christopher J Cramer; Ekaterina V Gauchenova; Jörg Sundermeyer; Justine P Roth
Journal:  J Am Chem Soc       Date:  2007-10-26       Impact factor: 15.419

7.  Spectroscopic and electronic structure studies of the diamagnetic side-on CuII-superoxo complex Cu(O2)[HB(3-R-5-iPrpz)3]: antiferromagnetic coupling versus covalent delocalization.

Authors:  Peng Chen; David E Root; Cecelia Campochiaro; Kiyoshi Fujisawa; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

8.  O2 reduction to H2O by the multicopper oxidases.

Authors:  Edward I Solomon; Anthony J Augustine; Jungjoo Yoon
Journal:  Dalton Trans       Date:  2008-05-07       Impact factor: 4.390

9.  Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.

Authors:  R Jason Quinlan; Matt D Sweeney; Leila Lo Leggio; Harm Otten; Jens-Christian N Poulsen; Katja Salomon Johansen; Kristian B R M Krogh; Christian Isak Jørgensen; Morten Tovborg; Annika Anthonsen; Theodora Tryfona; Clive P Walter; Paul Dupree; Feng Xu; Gideon J Davies; Paul H Walton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

10.  The copper active site of CBM33 polysaccharide oxygenases.

Authors:  Glyn R Hemsworth; Edward J Taylor; Robbert Q Kim; Rebecca C Gregory; Sally J Lewis; Johan P Turkenburg; Alison Parkin; Gideon J Davies; Paul H Walton
Journal:  J Am Chem Soc       Date:  2013-04-10       Impact factor: 15.419

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  58 in total

1.  Kinetic insights into the role of the reductant in H2O2-driven degradation of chitin by a bacterial lytic polysaccharide monooxygenase.

Authors:  Silja Kuusk; Riin Kont; Piret Kuusk; Agnes Heering; Morten Sørlie; Bastien Bissaro; Vincent G H Eijsink; Priit Väljamäe
Journal:  J Biol Chem       Date:  2018-12-04       Impact factor: 5.157

2.  Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity.

Authors:  Anna S Borisova; Trine Isaksen; Maria Dimarogona; Abhishek A Kognole; Geir Mathiesen; Anikó Várnai; Åsmund K Røhr; Christina M Payne; Morten Sørlie; Mats Sandgren; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2015-07-15       Impact factor: 5.157

Review 3.  Design and engineering of artificial oxygen-activating metalloenzymes.

Authors:  Flavia Nastri; Marco Chino; Ornella Maglio; Ambika Bhagi-Damodaran; Yi Lu; Angela Lombardi
Journal:  Chem Soc Rev       Date:  2016-06-24       Impact factor: 54.564

4.  Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2.

Authors:  Bastien Bissaro; Åsmund K Røhr; Gerdt Müller; Piotr Chylenski; Morten Skaugen; Zarah Forsberg; Svein J Horn; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Nat Chem Biol       Date:  2017-08-28       Impact factor: 15.040

Review 5.  Elaboration of copper-oxygen mediated C-H activation chemistry in consideration of future fuel and feedstock generation.

Authors:  Jung Yoon Lee; Kenneth D Karlin
Journal:  Curr Opin Chem Biol       Date:  2015-03-08       Impact factor: 8.822

6.  Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase.

Authors:  William B O'Dell; Pratul K Agarwal; Flora Meilleur
Journal:  Angew Chem Int Ed Engl       Date:  2016-12-22       Impact factor: 15.336

7.  Structural determinants of bacterial lytic polysaccharide monooxygenase functionality.

Authors:  Zarah Forsberg; Bastien Bissaro; Jonathan Gullesen; Bjørn Dalhus; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2017-12-08       Impact factor: 5.157

Review 8.  Functional characterization of cellulose-degrading AA9 lytic polysaccharide monooxygenases and their potential exploitation.

Authors:  Ruiqin Zhang
Journal:  Appl Microbiol Biotechnol       Date:  2020-02-19       Impact factor: 4.813

9.  Formally Copper(III)-Alkylperoxo Complexes as Models of Possible Intermediates in Monooxygenase Enzymes.

Authors:  Benjamin D Neisen; Nicole L Gagnon; Debanjan Dhar; Andrew D Spaeth; William B Tolman
Journal:  J Am Chem Soc       Date:  2017-07-19       Impact factor: 15.419

10.  High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.

Authors:  Henrik Hansson; Saeid Karkehabadi; Nils Mikkelsen; Nicholai R Douglas; Steve Kim; Anna Lam; Thijs Kaper; Brad Kelemen; Katlyn K Meier; Stephen M Jones; Edward I Solomon; Mats Sandgren
Journal:  J Biol Chem       Date:  2017-09-12       Impact factor: 5.157

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