Literature DB >> 26178376

Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity.

Anna S Borisova1, Trine Isaksen2, Maria Dimarogona1, Abhishek A Kognole3, Geir Mathiesen2, Anikó Várnai2, Åsmund K Røhr4, Christina M Payne5, Morten Sørlie2, Mats Sandgren6, Vincent G H Eijsink7.   

Abstract

The recently discovered lytic polysaccharide monooxygenases (LPMOs) carry out oxidative cleavage of polysaccharides and are of major importance for efficient processing of biomass. NcLPMO9C from Neurospora crassa acts both on cellulose and on non-cellulose β-glucans, including cellodextrins and xyloglucan. The crystal structure of the catalytic domain of NcLPMO9C revealed an extended, highly polar substrate-binding surface well suited to interact with a variety of sugar substrates. The ability of NcLPMO9C to act on soluble substrates was exploited to study enzyme-substrate interactions. EPR studies demonstrated that the Cu(2+) center environment is altered upon substrate binding, whereas isothermal titration calorimetry studies revealed binding affinities in the low micromolar range for polymeric substrates that are due in part to the presence of a carbohydrate-binding module (CBM1). Importantly, the novel structure of NcLPMO9C enabled a comparative study, revealing that the oxidative regioselectivity of LPMO9s (C1, C4, or both) correlates with distinct structural features of the copper coordination sphere. In strictly C1-oxidizing LPMO9s, access to the solvent-facing axial coordination position is restricted by a conserved tyrosine residue, whereas access to this same position seems unrestricted in C4-oxidizing LPMO9s. LPMO9s known to produce a mixture of C1- and C4-oxidized products show an intermediate situation.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  biodegradation; bioenergy; copper monooxygenase; crystal structure; electron paramagnetic resonance (EPR); isothermal titration calorimetry (ITC)

Mesh:

Substances:

Year:  2015        PMID: 26178376      PMCID: PMC4645601          DOI: 10.1074/jbc.M115.660183

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  55 in total

1.  Phi/psi-chology: Ramachandran revisited.

Authors:  G J Kleywegt; T A Jones
Journal:  Structure       Date:  1996-12-15       Impact factor: 5.006

2.  Entropies of redox reactions between proteins and mediators: the temperature dependence of reversible electrode potentials in aqueous buffers.

Authors:  Y Liu; L C Seefeldt; V D Parker
Journal:  Anal Biochem       Date:  1997-08-01       Impact factor: 3.365

3.  Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases.

Authors:  Zarah Forsberg; Alasdair K Mackenzie; Morten Sørlie; Åsmund K Røhr; Ronny Helland; Andrew S Arvai; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

4.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

5.  Determination of the number-average degree of polymerization of cellodextrins and cellulose with application to enzymatic hydrolysis.

Authors:  Y-H Percival Zhang; Lee R Lynd
Journal:  Biomacromolecules       Date:  2005 May-Jun       Impact factor: 6.988

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.

Authors:  Garrett M Morris; Ruth Huey; William Lindstrom; Michel F Sanner; Richard K Belew; David S Goodsell; Arthur J Olson
Journal:  J Comput Chem       Date:  2009-12       Impact factor: 3.376

8.  Characterization of the two Neurospora crassa cellobiose dehydrogenases and their connection to oxidative cellulose degradation.

Authors:  Christoph Sygmund; Daniel Kracher; Stefan Scheiblbrandner; Kawah Zahma; Alfons K G Felice; Wolfgang Harreither; Roman Kittl; Roland Ludwig
Journal:  Appl Environ Microbiol       Date:  2012-06-22       Impact factor: 4.792

9.  Expression of endoglucanases in Pichia pastoris under control of the GAP promoter.

Authors:  Anikó Várnai; Campbell Tang; Oskar Bengtsson; Andrew Atterton; Geir Mathiesen; Vincent G H Eijsink
Journal:  Microb Cell Fact       Date:  2014-04-18       Impact factor: 5.328

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  55 in total

1.  Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2.

Authors:  Bastien Bissaro; Åsmund K Røhr; Gerdt Müller; Piotr Chylenski; Morten Skaugen; Zarah Forsberg; Svein J Horn; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Nat Chem Biol       Date:  2017-08-28       Impact factor: 15.040

2.  Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.

Authors:  Kristian E H Frandsen; Morten Tovborg; Christian I Jørgensen; Nikolaj Spodsberg; Marie-Noëlle Rosso; Glyn R Hemsworth; Elspeth F Garman; Geoffrey W Grime; Jens-Christian N Poulsen; Tanveer S Batth; Shingo Miyauchi; Anna Lipzen; Chris Daum; Igor V Grigoriev; Katja S Johansen; Bernard Henrissat; Jean-Guy Berrin; Leila Lo Leggio
Journal:  J Biol Chem       Date:  2019-08-30       Impact factor: 5.157

3.  Structural determinants of bacterial lytic polysaccharide monooxygenase functionality.

Authors:  Zarah Forsberg; Bastien Bissaro; Jonathan Gullesen; Bjørn Dalhus; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2017-12-08       Impact factor: 5.157

Review 4.  Functional characterization of cellulose-degrading AA9 lytic polysaccharide monooxygenases and their potential exploitation.

Authors:  Ruiqin Zhang
Journal:  Appl Microbiol Biotechnol       Date:  2020-02-19       Impact factor: 4.813

5.  Kinetic analysis of amino acid radicals formed in H2O2-driven CuI LPMO reoxidation implicates dominant homolytic reactivity.

Authors:  Stephen M Jones; Wesley J Transue; Katlyn K Meier; Bradley Kelemen; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-15       Impact factor: 11.205

Review 6.  Starch-degrading polysaccharide monooxygenases.

Authors:  Van V Vu; Michael A Marletta
Journal:  Cell Mol Life Sci       Date:  2016-05-12       Impact factor: 9.261

7.  Methylation of the N-terminal histidine protects a lytic polysaccharide monooxygenase from auto-oxidative inactivation.

Authors:  Dejan M Petrović; Bastien Bissaro; Piotr Chylenski; Morten Skaugen; Morten Sørlie; Marianne S Jensen; Finn L Aachmann; Gaston Courtade; Anikó Várnai; Vincent G H Eijsink
Journal:  Protein Sci       Date:  2018-09       Impact factor: 6.725

8.  The Role of the Secondary Coordination Sphere in a Fungal Polysaccharide Monooxygenase.

Authors:  Elise A Span; Daniel L M Suess; Marc C Deller; R David Britt; Michael A Marletta
Journal:  ACS Chem Biol       Date:  2017-03-03       Impact factor: 5.100

9.  High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.

Authors:  Henrik Hansson; Saeid Karkehabadi; Nils Mikkelsen; Nicholai R Douglas; Steve Kim; Anna Lam; Thijs Kaper; Brad Kelemen; Katlyn K Meier; Stephen M Jones; Edward I Solomon; Mats Sandgren
Journal:  J Biol Chem       Date:  2017-09-12       Impact factor: 5.157

Review 10.  Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars.

Authors:  Katlyn K Meier; Stephen M Jones; Thijs Kaper; Henrik Hansson; Martijn J Koetsier; Saeid Karkehabadi; Edward I Solomon; Mats Sandgren; Bradley Kelemen
Journal:  Chem Rev       Date:  2017-11-20       Impact factor: 60.622

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