Literature DB >> 28004877

Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase.

William B O'Dell1, Pratul K Agarwal2, Flora Meilleur1.   

Abstract

Lytic polysaccharide monooxygenases have attracted vast attention owing to their abilities to disrupt glycosidic bonds via oxidation instead of hydrolysis and to enhance enzymatic digestion of recalcitrant substrates including chitin and cellulose. We have determined high-resolution X-ray crystal structures of an enzyme from Neurospora crassa in the resting state and of a copper(II) dioxo intermediate complex formed in the absence of substrate. X-ray crystal structures also revealed "pre-bound" molecular oxygen adjacent to the active site. An examination of protonation states enabled by neutron crystallography and density functional theory calculations identified a role for a conserved histidine in promoting oxygen activation. These results provide a new structural description of oxygen activation by substrate free lytic polysaccharide monooxygenases and provide insights that can be extended to reactivity in the enzyme-substrate complex.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  copper; oxidoreductases; oxygen activation; polysaccharide monooxygenases; protein structures

Mesh:

Substances:

Year:  2016        PMID: 28004877      PMCID: PMC5340418          DOI: 10.1002/anie.201610502

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  21 in total

1.  Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa.

Authors:  Christopher M Phillips; William T Beeson; Jamie H Cate; Michael A Marletta
Journal:  ACS Chem Biol       Date:  2011-10-25       Impact factor: 5.100

2.  Joint X-ray and neutron refinement with phenix.refine.

Authors:  Pavel V Afonine; Marat Mustyakimov; Ralf W Grosse-Kunstleve; Nigel W Moriarty; Paul Langan; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

3.  A high-resolution XAS study of aqueous Cu(II) in liquid and frozen solutions: pyramidal, polymorphic, and non-centrosymmetric.

Authors:  Patrick Frank; Maurizio Benfatto; Munzarin Qayyam; Britt Hedman; Keith O Hodgson
Journal:  J Chem Phys       Date:  2015-02-28       Impact factor: 3.488

4.  The IMAGINE instrument: first neutron protein structure and new capabilities for neutron macromolecular crystallography.

Authors:  Flora Meilleur; Parthapratim Munshi; Lee Robertson; Alexandru D Stoica; Lowell Crow; Andrey Kovalevsky; Tibor Koritsanszky; Bryan C Chakoumakos; Robert Blessing; Dean A A Myles
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-09-20

5.  Probing oxygen activation sites in two flavoprotein oxidases using chloride as an oxygen surrogate.

Authors:  Phaneeswara-Rao Kommoju; Zhi-wei Chen; Robert C Bruckner; F Scott Mathews; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2011-05-26       Impact factor: 3.162

6.  Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism.

Authors:  Seonah Kim; Jerry Ståhlberg; Mats Sandgren; Robert S Paton; Gregg T Beckham
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-16       Impact factor: 11.205

7.  Structural and electronic snapshots during the transition from a Cu(II) to Cu(I) metal center of a lytic polysaccharide monooxygenase by X-ray photoreduction.

Authors:  Mikael Gudmundsson; Seonah Kim; Miao Wu; Takuya Ishida; Majid Hadadd Momeni; Gustav Vaaje-Kolstad; Daniel Lundberg; Antoine Royant; Jerry Ståhlberg; Vincent G H Eijsink; Gregg T Beckham; Mats Sandgren
Journal:  J Biol Chem       Date:  2014-05-14       Impact factor: 5.157

8.  Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality.

Authors:  Scott J Lee; Thomas A Warnick; Sivakumar Pattathil; Jesús G Alvelo-Maurosa; Michelle J Serapiglia; Heather McCormick; Virginia Brown; Naomi F Young; Danny J Schnell; Lawrence B Smart; Michael G Hahn; Jeffrey F Pedersen; Susan B Leschine; Samuel P Hazen
Journal:  Biotechnol Biofuels       Date:  2012-02-08       Impact factor: 6.040

9.  Cellulose surface degradation by a lytic polysaccharide monooxygenase and its effect on cellulase hydrolytic efficiency.

Authors:  Manuel Eibinger; Thomas Ganner; Patricia Bubner; Stephanie Rošker; Daniel Kracher; Dietmar Haltrich; Roland Ludwig; Harald Plank; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2014-10-31       Impact factor: 5.157

10.  Production of four Neurospora crassa lytic polysaccharide monooxygenases in Pichia pastoris monitored by a fluorimetric assay.

Authors:  Roman Kittl; Daniel Kracher; Daniel Burgstaller; Dietmar Haltrich; Roland Ludwig
Journal:  Biotechnol Biofuels       Date:  2012-10-26       Impact factor: 6.040

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  21 in total

1.  The Role of the Secondary Coordination Sphere in a Fungal Polysaccharide Monooxygenase.

Authors:  Elise A Span; Daniel L M Suess; Marc C Deller; R David Britt; Michael A Marletta
Journal:  ACS Chem Biol       Date:  2017-03-03       Impact factor: 5.100

2.  End-On Copper(I) Superoxo and Cu(II) Peroxo and Hydroperoxo Complexes Generated by Cryoreduction/Annealing and Characterized by EPR/ENDOR Spectroscopy.

Authors:  Roman Davydov; Austin E Herzog; Richard J Jodts; Kenneth D Karlin; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2022-01-04       Impact factor: 15.419

3.  Copper monooxygenase reactivity: Do consensus mechanisms accurately reflect experimental observations?

Authors:  Evan F Welch; Katherine W Rush; Renee J Arias; Ninian J Blackburn
Journal:  J Inorg Biochem       Date:  2022-02-28       Impact factor: 4.336

4.  Peroxide Activation Regulated by Hydrogen Bonds within Artificial Cu Proteins.

Authors:  Samuel I Mann; Tillmann Heinisch; Thomas R Ward; A S Borovik
Journal:  J Am Chem Soc       Date:  2017-11-15       Impact factor: 15.419

Review 5.  Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars.

Authors:  Katlyn K Meier; Stephen M Jones; Thijs Kaper; Henrik Hansson; Martijn J Koetsier; Saeid Karkehabadi; Edward I Solomon; Mats Sandgren; Bradley Kelemen
Journal:  Chem Rev       Date:  2017-11-20       Impact factor: 60.622

Review 6.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

7.  Molecular mechanism of the chitinolytic peroxygenase reaction.

Authors:  Bastien Bissaro; Bennett Streit; Ingvild Isaksen; Vincent G H Eijsink; Gregg T Beckham; Jennifer L DuBois; Åsmund K Røhr
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-06       Impact factor: 11.205

8.  Preliminary results of neutron and X-ray diffraction data collection on a lytic polysaccharide monooxygenase under reduced and acidic conditions.

Authors:  Gabriela C Schröder; William B O'Dell; Paul D Swartz; Flora Meilleur
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-03-31       Impact factor: 1.056

9.  Active-site copper reduction promotes substrate binding of fungal lytic polysaccharide monooxygenase and reduces stability.

Authors:  Daniel Kracher; Martina Andlar; Paul G Furtmüller; Roland Ludwig
Journal:  J Biol Chem       Date:  2017-12-19       Impact factor: 5.157

10.  The role of the active site tyrosine in the mechanism of lytic polysaccharide monooxygenase.

Authors:  Aina McEvoy; Joel Creutzberg; Raushan K Singh; Morten J Bjerrum; Erik D Hedegård
Journal:  Chem Sci       Date:  2020-11-04       Impact factor: 9.825

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