Literature DB >> 29222333

Structural determinants of bacterial lytic polysaccharide monooxygenase functionality.

Zarah Forsberg1, Bastien Bissaro2,3, Jonathan Gullesen2, Bjørn Dalhus4,5, Gustav Vaaje-Kolstad2, Vincent G H Eijsink2.   

Abstract

Bacterial lytic polysaccharide monooxygenases (LPMO10s) use redox chemistry to cleave glycosidic bonds in the two foremost recalcitrant polysaccharides found in nature, namely cellulose and chitin. Analysis of correlated mutations revealed that the substrate-binding and copper-containing surface of LPMO10s composes a network of co-evolved residues and interactions, whose roles in LPMO functionality are unclear. Here, we mutated a subset of these correlated residues in a newly characterized C1/C4-oxidizing LPMO10 from Micromonospora aurantiaca (MaLPMO10B) to the corresponding residues in strictly C1-oxidizing LPMO10s. We found that surface properties near the catalytic copper, i.e. side chains likely to be involved in substrate positioning, are major determinants of the C1:C4 ratio. Several MaLPMO10B mutants almost completely lost C4-oxidizing activity while maintaining C1-oxidizing activity. These mutants also lost chitin-oxidizing activity, which is typically observed for C1/C4-oxidizing, but not for C1-oxidizing, cellulose-active LPMO10s. Selective loss in C1-oxidizing activity was not observed. Additional mutational experiments disclosed that neither truncation of the MaLPMO10B family 2 carbohydrate-binding module nor mutations altering access to the solvent-exposed axial copper coordination site significantly change the C1:C4 ratio. Importantly, several of the mutations that altered interactions with the substrate exhibited reduced stability. This effect could be explained by productive substrate binding that protects LPMOs from oxidative self-inactivation. We discuss these stability issues in view of recent findings on LPMO catalysis, such as the involvement of H2O2 Our results show that residues on the substrate-binding surface of LPMOs have co-evolved to optimize several of the interconnected properties: substrate binding and specificity, oxidative regioselectivity, catalytic efficiency, and stability.
© 2018 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  LPMO; cellulose; chitin; hydrogen peroxide; protein evolution; regioselectivity; site-directed mutagenesis; substrate specificity

Mesh:

Substances:

Year:  2017        PMID: 29222333      PMCID: PMC5787815          DOI: 10.1074/jbc.M117.817130

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  60 in total

1.  Simultaneous analysis of C1 and C4 oxidized oligosaccharides, the products of lytic polysaccharide monooxygenases acting on cellulose.

Authors:  Bjørge Westereng; Magnus Ø Arntzen; Finn L Aachmann; Anikó Várnai; Vincent G H Eijsink; Jane Wittrup Agger
Journal:  J Chromatogr A       Date:  2016-03-25       Impact factor: 4.759

2.  Structural and Functional Characterization of a Lytic Polysaccharide Monooxygenase with Broad Substrate Specificity.

Authors:  Anna S Borisova; Trine Isaksen; Maria Dimarogona; Abhishek A Kognole; Geir Mathiesen; Anikó Várnai; Åsmund K Røhr; Christina M Payne; Morten Sørlie; Mats Sandgren; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2015-07-15       Impact factor: 5.157

3.  Oxidative cleavage of polysaccharides by monocopper enzymes depends on H2O2.

Authors:  Bastien Bissaro; Åsmund K Røhr; Gerdt Müller; Piotr Chylenski; Morten Skaugen; Zarah Forsberg; Svein J Horn; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  Nat Chem Biol       Date:  2017-08-28       Impact factor: 15.040

4.  Structural and Functional Analysis of a Lytic Polysaccharide Monooxygenase Important for Efficient Utilization of Chitin in Cellvibrio japonicus.

Authors:  Zarah Forsberg; Cassandra E Nelson; Bjørn Dalhus; Sophanit Mekasha; Jennifer S M Loose; Lucy I Crouch; Åsmund K Røhr; Jeffrey G Gardner; Vincent G H Eijsink; Gustav Vaaje-Kolstad
Journal:  J Biol Chem       Date:  2016-02-08       Impact factor: 5.157

5.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

7.  Interactions of a fungal lytic polysaccharide monooxygenase with β-glucan substrates and cellobiose dehydrogenase.

Authors:  Gaston Courtade; Reinhard Wimmer; Åsmund K Røhr; Marita Preims; Alfons K G Felice; Maria Dimarogona; Gustav Vaaje-Kolstad; Morten Sørlie; Mats Sandgren; Roland Ludwig; Vincent G H Eijsink; Finn Lillelund Aachmann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-05       Impact factor: 12.779

8.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

9.  Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates.

Authors:  T J Simmons; K E H Frandsen; L Ciano; T Tryfona; N Lenfant; J C Poulsen; L F L Wilson; T Tandrup; M Tovborg; K Schnorr; K S Johansen; B Henrissat; P H Walton; L Lo Leggio; P Dupree
Journal:  Nat Commun       Date:  2017-10-20       Impact factor: 14.919

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  25 in total

1.  Kinetic insights into the role of the reductant in H2O2-driven degradation of chitin by a bacterial lytic polysaccharide monooxygenase.

Authors:  Silja Kuusk; Riin Kont; Piret Kuusk; Agnes Heering; Morten Sørlie; Bastien Bissaro; Vincent G H Eijsink; Priit Väljamäe
Journal:  J Biol Chem       Date:  2018-12-04       Impact factor: 5.157

2.  The carbohydrate-binding module and linker of a modular lytic polysaccharide monooxygenase promote localized cellulose oxidation.

Authors:  Gaston Courtade; Zarah Forsberg; Ellinor B Heggset; Vincent G H Eijsink; Finn L Aachmann
Journal:  J Biol Chem       Date:  2018-07-02       Impact factor: 5.157

Review 3.  Functional characterization of cellulose-degrading AA9 lytic polysaccharide monooxygenases and their potential exploitation.

Authors:  Ruiqin Zhang
Journal:  Appl Microbiol Biotechnol       Date:  2020-02-19       Impact factor: 4.813

4.  Engineering chitinolytic activity into a cellulose-active lytic polysaccharide monooxygenase provides insights into substrate specificity.

Authors:  Marianne Slang Jensen; Geir Klinkenberg; Bastien Bissaro; Piotr Chylenski; Gustav Vaaje-Kolstad; Hans Fredrik Kvitvang; Guro Kruge Nærdal; Håvard Sletta; Zarah Forsberg; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2019-10-27       Impact factor: 5.157

5.  A Lytic Polysaccharide Monooxygenase from a White-Rot Fungus Drives the Degradation of Lignin by a Versatile Peroxidase.

Authors:  Fei Li; Fuying Ma; Honglu Zhao; Shu Zhang; Lei Wang; Xiaoyu Zhang; Hongbo Yu
Journal:  Appl Environ Microbiol       Date:  2019-04-18       Impact factor: 4.792

6.  Comparison of three seemingly similar lytic polysaccharide monooxygenases from Neurospora crassa suggests different roles in plant biomass degradation.

Authors:  Dejan M Petrović; Anikó Várnai; Maria Dimarogona; Geir Mathiesen; Mats Sandgren; Bjørge Westereng; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2019-08-20       Impact factor: 5.157

7.  Chitin-Active Lytic Polysaccharide Monooxygenases Are Rare in Cellulomonas Species.

Authors:  James Li; Ethan D Goddard-Borger; Olanrewaju Raji; Hirak Saxena; Laleh Solhi; Yann Mathieu; Emma R Master; Warren W Wakarchuk; Harry Brumer
Journal:  Appl Environ Microbiol       Date:  2022-07-12       Impact factor: 5.005

Review 8.  Orchestrating copper binding: structure and variations on the cupredoxin fold.

Authors:  Jing Guo; Oriana S Fisher
Journal:  J Biol Inorg Chem       Date:  2022-08-22       Impact factor: 3.862

9.  A trimodular bacterial enzyme combining hydrolytic activity with oxidative glycosidic bond cleavage efficiently degrades chitin.

Authors:  Sophanit Mekasha; Tina Rise Tuveng; Fatemeh Askarian; Swati Choudhary; Claudia Schmidt-Dannert; Axel Niebisch; Jan Modregger; Gustav Vaaje-Kolstad; Vincent G H Eijsink
Journal:  J Biol Chem       Date:  2020-05-12       Impact factor: 5.157

Review 10.  Distinct Substrate Specificities and Electron-Donating Systems of Fungal Lytic Polysaccharide Monooxygenases.

Authors:  Matthias Frommhagen; Adrie H Westphal; Willem J H van Berkel; Mirjam A Kabel
Journal:  Front Microbiol       Date:  2018-05-29       Impact factor: 5.640

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