Literature DB >> 24772218

Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive.

Jayashree Kalpathy-Cramer1, John Blake Freymann2, Justin Stephen Kirby2, Paul Eugene Kinahan3, Fred William Prior4.   

Abstract

The Quantitative Imaging Network (QIN), supported by the National Cancer Institute, is designed to promote research and development of quantitative imaging methods and candidate biomarkers for the measurement of tumor response in clinical trial settings. An integral aspect of the QIN mission is to facilitate collaborative activities that seek to develop best practices for the analysis of cancer imaging data. The QIN working groups and teams are developing new algorithms for image analysis and novel biomarkers for the assessment of response to therapy. To validate these algorithms and biomarkers and translate them into clinical practice, algorithms need to be compared and evaluated on large and diverse data sets. Analysis competitions, or "challenges," are being conducted within the QIN as a means to accomplish this goal. The QIN has demonstrated, through its leveraging of The Cancer Imaging Archive (TCIA), that data sharing of clinical images across multiple sites is feasible and that it can enable and support these challenges. In addition to Digital Imaging and Communications in Medicine (DICOM) imaging data, many TCIA collections provide linked clinical, pathology, and "ground truth" data generated by readers that could be used for further challenges. The TCIA-QIN partnership is a successful model that provides resources for multisite sharing of clinical imaging data and the implementation of challenges to support algorithm and biomarker validation.

Entities:  

Year:  2014        PMID: 24772218      PMCID: PMC3998686          DOI: 10.1593/tlo.13862

Source DB:  PubMed          Journal:  Transl Oncol        ISSN: 1936-5233            Impact factor:   4.243


  15 in total

Review 1.  Image data sharing for biomedical research--meeting HIPAA requirements for De-identification.

Authors:  John B Freymann; Justin S Kirby; John H Perry; David A Clunie; C Carl Jaffe
Journal:  J Digit Imaging       Date:  2012-02       Impact factor: 4.056

2.  The Lung Image Database Consortium (LIDC) data collection process for nodule detection and annotation.

Authors:  Michael F McNitt-Gray; Samuel G Armato; Charles R Meyer; Anthony P Reeves; Geoffrey McLennan; Richie C Pais; John Freymann; Matthew S Brown; Roger M Engelmann; Peyton H Bland; Gary E Laderach; Chris Piker; Junfeng Guo; Zaid Towfic; David P-Y Qing; David F Yankelevitz; Denise R Aberle; Edwin J R van Beek; Heber MacMahon; Ella A Kazerooni; Barbara Y Croft; Laurence P Clarke
Journal:  Acad Radiol       Date:  2007-12       Impact factor: 3.173

Review 3.  The quest for biomarkers in tuberculosis.

Authors:  Shreemanta K Parida; Stefan H E Kaufmann
Journal:  Drug Discov Today       Date:  2009-10-23       Impact factor: 7.851

4.  A comparison of two methods for estimating DCE-MRI parameters via individual and cohort based AIFs in prostate cancer: a step towards practical implementation.

Authors:  Andriy Fedorov; Jacob Fluckiger; Gregory D Ayers; Xia Li; Sandeep N Gupta; Clare Tempany; Robert Mulkern; Thomas E Yankeelov; Fiona M Fennessy
Journal:  Magn Reson Imaging       Date:  2014-01-21       Impact factor: 2.546

5.  The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.

Authors:  Kenneth Clark; Bruce Vendt; Kirk Smith; John Freymann; Justin Kirby; Paul Koppel; Stephen Moore; Stanley Phillips; David Maffitt; Michael Pringle; Lawrence Tarbox; Fred Prior
Journal:  J Digit Imaging       Date:  2013-12       Impact factor: 4.056

6.  TCIA: An information resource to enable open science.

Authors:  Fred W Prior; Ken Clark; Paul Commean; John Freymann; Carl Jaffe; Justin Kirby; Stephen Moore; Kirk Smith; Lawrence Tarbox; Bruce Vendt; Guillermo Marquez
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

7.  MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set.

Authors:  David A Gutman; Lee A D Cooper; Scott N Hwang; Chad A Holder; Jingjing Gao; Tarun D Aurora; William D Dunn; Lisa Scarpace; Tom Mikkelsen; Rajan Jain; Max Wintermark; Manal Jilwan; Prashant Raghavan; Erich Huang; Robert J Clifford; Pattanasak Mongkolwat; Vladimir Kleper; John Freymann; Justin Kirby; Pascal O Zinn; Carlos S Moreno; Carl Jaffe; Rivka Colen; Daniel L Rubin; Joel Saltz; Adam Flanders; Daniel J Brat
Journal:  Radiology       Date:  2013-02-07       Impact factor: 11.105

8.  Prize-based contests can provide solutions to computational biology problems.

Authors:  Karim R Lakhani; Kevin J Boudreau; Po-Ru Loh; Lars Backstrom; Carliss Baldwin; Eric Lonstein; Mike Lydon; Alan MacCormack; Ramy A Arnaout; Eva C Guinan
Journal:  Nat Biotechnol       Date:  2013-02       Impact factor: 54.908

9.  Radiogenomic mapping of edema/cellular invasion MRI-phenotypes in glioblastoma multiforme.

Authors:  Pascal O Zinn; Bhanu Mahajan; Bhanu Majadan; Pratheesh Sathyan; Sanjay K Singh; Sadhan Majumder; Ferenc A Jolesz; Rivka R Colen
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

10.  The caBIG annotation and image Markup project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Kastubh Sepukar; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2009-03-18       Impact factor: 4.056

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  37 in total

1.  Pretreatment 18F-FDG PET Textural Features in Locally Advanced Non-Small Cell Lung Cancer: Secondary Analysis of ACRIN 6668/RTOG 0235.

Authors:  Nitin Ohri; Fenghai Duan; Bradley S Snyder; Bo Wei; Mitchell Machtay; Abass Alavi; Barry A Siegel; Douglas W Johnson; Jeffrey D Bradley; Albert DeNittis; Maria Werner-Wasik; Issam El Naqa
Journal:  J Nucl Med       Date:  2016-02-11       Impact factor: 10.057

2.  Open access image repositories: high-quality data to enable machine learning research.

Authors:  F Prior; J Almeida; P Kathiravelu; T Kurc; K Smith; T J Fitzgerald; J Saltz
Journal:  Clin Radiol       Date:  2019-04-28       Impact factor: 2.350

Review 3.  "Radio-oncomics" : The potential of radiomics in radiation oncology.

Authors:  Jan Caspar Peeken; Fridtjof Nüsslin; Stephanie E Combs
Journal:  Strahlenther Onkol       Date:  2017-07-07       Impact factor: 3.621

4.  Quantitative Assessment of Variation in CT Parameters on Texture Features: Pilot Study Using a Nonanatomic Phantom.

Authors:  K Buch; B Li; M M Qureshi; H Kuno; S W Anderson; O Sakai
Journal:  AJNR Am J Neuroradiol       Date:  2017-03-24       Impact factor: 3.825

5.  Radiology and Enterprise Medical Imaging Extensions (REMIX).

Authors:  Barbaros S Erdal; Luciano M Prevedello; Songyue Qian; Mutlu Demirer; Kevin Little; John Ryu; Thomas O'Donnell; Richard D White
Journal:  J Digit Imaging       Date:  2018-02       Impact factor: 4.056

Review 6.  An Assessment of Imaging Informatics for Precision Medicine in Cancer.

Authors:  C Chennubhotla; L P Clarke; A Fedorov; D Foran; G Harris; E Helton; R Nordstrom; F Prior; D Rubin; J H Saltz; E Shalley; A Sharma
Journal:  Yearb Med Inform       Date:  2017-09-11

Review 7.  Head and Neck Cancer Adaptive Radiation Therapy (ART): Conceptual Considerations for the Informed Clinician.

Authors:  Jolien Heukelom; Clifton David Fuller
Journal:  Semin Radiat Oncol       Date:  2019-07       Impact factor: 5.934

8.  Comparison of prone versus supine 18F-FDG-PET of locally advanced breast cancer: Phantom and preliminary clinical studies.

Authors:  Jason M Williams; Sudheer D Rani; Xia Li; Lori R Arlinghaus; Tzu-Cheng Lee; Lawrence R MacDonald; Savannah C Partridge; Hakmook Kang; Jennifer G Whisenant; Richard G Abramson; Hannah M Linden; Paul E Kinahan; Thomas E Yankeelov
Journal:  Med Phys       Date:  2015-07       Impact factor: 4.071

9.  Distinguishing True Progression From Radionecrosis After Stereotactic Radiation Therapy for Brain Metastases With Machine Learning and Radiomics.

Authors:  Luke Peng; Vishwa Parekh; Peng Huang; Doris D Lin; Khadija Sheikh; Brock Baker; Talia Kirschbaum; Francesca Silvestri; Jessica Son; Adam Robinson; Ellen Huang; Heather Ames; Jimm Grimm; Linda Chen; Colette Shen; Michael Soike; Emory McTyre; Kristin Redmond; Michael Lim; Junghoon Lee; Michael A Jacobs; Lawrence Kleinberg
Journal:  Int J Radiat Oncol Biol Phys       Date:  2018-05-24       Impact factor: 7.038

10.  Big data in oncologic imaging.

Authors:  Daniele Regge; Simone Mazzetti; Valentina Giannini; Christian Bracco; Michele Stasi
Journal:  Radiol Med       Date:  2016-09-13       Impact factor: 3.469

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