Literature DB >> 31040006

Open access image repositories: high-quality data to enable machine learning research.

F Prior1, J Almeida2, P Kathiravelu3, T Kurc4, K Smith5, T J Fitzgerald6, J Saltz4.   

Abstract

Originally motivated by the need for research reproducibility and data reuse, large-scale, open access information repositories have become key resources for training and testing of advanced machine learning applications in biomedical and clinical research. To be of value, such repositories must provide large, high-quality data sets, where quality is defined as minimising variance due to data collection protocols and data misrepresentations. Curation is the key to quality. We have constructed a large public access image repository, The Cancer Imaging Archive, dedicated to the promotion of open science to advance the global effort to diagnose and treat cancer. Drawing on this experience and our experience in applying machine learning techniques to the analysis of radiology and pathology image data, we will review the requirements placed on such information repositories by state-of-the-art machine learning applications and how these requirements can be met.
Copyright © 2019 The Royal College of Radiologists. All rights reserved.

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Year:  2019        PMID: 31040006      PMCID: PMC6815686          DOI: 10.1016/j.crad.2019.04.002

Source DB:  PubMed          Journal:  Clin Radiol        ISSN: 0009-9260            Impact factor:   2.350


  70 in total

1.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

Review 2.  The clinical value of large neuroimaging data sets in Alzheimer's disease.

Authors:  Arthur W Toga
Journal:  Neuroimaging Clin N Am       Date:  2011-12-17       Impact factor: 2.264

Review 3.  Computer-aided diagnosis in medical imaging: historical review, current status and future potential.

Authors:  Kunio Doi
Journal:  Comput Med Imaging Graph       Date:  2007-03-08       Impact factor: 4.790

4.  Digital Imaging and Communications in Medicine (DICOM) as standard in digital pathology.

Authors:  Thomas Kalinski; Ralf Zwönitzer; Mathias Roßner; Harald Hofmann; Albert Roessner; Thomas Guenther
Journal:  Histopathology       Date:  2012-05-02       Impact factor: 5.087

5.  Artificial Intelligence and Machine Learning in Radiology: Opportunities, Challenges, Pitfalls, and Criteria for Success.

Authors:  James H Thrall; Xiang Li; Quanzheng Li; Cinthia Cruz; Synho Do; Keith Dreyer; James Brink
Journal:  J Am Coll Radiol       Date:  2018-02-04       Impact factor: 5.532

6.  A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images.

Authors:  Joel Saltz; Ashish Sharma; Ganesh Iyer; Erich Bremer; Feiqiao Wang; Alina Jasniewski; Tammy DiPrima; Jonas S Almeida; Yi Gao; Tianhao Zhao; Mary Saltz; Tahsin Kurc
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

7.  Integrated morphologic analysis for the identification and characterization of disease subtypes.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; Fusheng Wang; Jingjing Gao; Christina Appin; Sharath Cholleti; Tony Pan; Ashish Sharma; Lisa Scarpace; Tom Mikkelsen; Tahsin Kurc; Carlos S Moreno; Daniel J Brat; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2012-01-24       Impact factor: 4.497

8.  Implementing the DICOM Standard for Digital Pathology.

Authors:  Markus D Herrmann; David A Clunie; Andriy Fedorov; Sean W Doyle; Steven Pieper; Veronica Klepeis; Long P Le; George L Mutter; David S Milstone; Thomas J Schultz; Ron Kikinis; Gopal K Kotecha; David H Hwang; Katherine P Andriole; A John Iafrate; James A Brink; Giles W Boland; Keith J Dreyer; Mark Michalski; Jeffrey A Golden; David N Louis; Jochen K Lennerz
Journal:  J Pathol Inform       Date:  2018-11-02

Review 9.  Artificial intelligence in cancer imaging: Clinical challenges and applications.

Authors:  Wenya Linda Bi; Ahmed Hosny; Matthew B Schabath; Maryellen L Giger; Nicolai J Birkbak; Alireza Mehrtash; Tavis Allison; Omar Arnaout; Christopher Abbosh; Ian F Dunn; Raymond H Mak; Rulla M Tamimi; Clare M Tempany; Charles Swanton; Udo Hoffmann; Lawrence H Schwartz; Robert J Gillies; Raymond Y Huang; Hugo J W L Aerts
Journal:  CA Cancer J Clin       Date:  2019-02-05       Impact factor: 508.702

10.  Radiomic feature clusters and prognostic signatures specific for Lung and Head & Neck cancer.

Authors:  Chintan Parmar; Ralph T H Leijenaar; Patrick Grossmann; Emmanuel Rios Velazquez; Johan Bussink; Derek Rietveld; Michelle M Rietbergen; Benjamin Haibe-Kains; Philippe Lambin; Hugo J W L Aerts
Journal:  Sci Rep       Date:  2015-06-05       Impact factor: 4.379

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  10 in total

Review 1.  Deep Learning-Based Image Reconstruction for Different Medical Imaging Modalities.

Authors:  Feng Jinchao; Shahzad Ahmed; Muhammad Yaqub; Kaleem Arshid; Wenqian Zhang; Muhammad Zubair Nawaz; Tariq Mahmood
Journal:  Comput Math Methods Med       Date:  2022-06-16       Impact factor: 2.809

Review 2.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

3.  PRISM: A Platform for Imaging in Precision Medicine.

Authors:  Ashish Sharma; Lawrence Tarbox; Tahsin Kurc; Jonathan Bona; Kirk Smith; Pradeeban Kathiravelu; Erich Bremer; Joel H Saltz; Fred Prior
Journal:  JCO Clin Cancer Inform       Date:  2020-06

Review 4.  Artificial Intelligence for the Future Radiology Diagnostic Service.

Authors:  Seong K Mun; Kenneth H Wong; Shih-Chung B Lo; Yanni Li; Shijir Bayarsaikhan
Journal:  Front Mol Biosci       Date:  2021-01-28

5.  Development and operation of a digital platform for sharing pathology image data.

Authors:  Yunsook Kang; Yoo Jung Kim; Seongkeun Park; Gun Ro; Choyeon Hong; Hyungjoon Jang; Sungduk Cho; Won Jae Hong; Dong Un Kang; Jonghoon Chun; Kyoungbun Lee; Gyeong Hoon Kang; Kyoung Chul Moon; Gheeyoung Choe; Kyu Sang Lee; Jeong Hwan Park; Won-Ki Jeong; Se Young Chun; Peom Park; Jinwook Choi
Journal:  BMC Med Inform Decis Mak       Date:  2021-04-03       Impact factor: 2.796

Review 6.  Deep Learning in Large and Multi-Site Structural Brain MR Imaging Datasets.

Authors:  Mariana Bento; Irene Fantini; Justin Park; Leticia Rittner; Richard Frayne
Journal:  Front Neuroinform       Date:  2022-01-20       Impact factor: 4.081

Review 7.  Radiomics in prostate cancer: an up-to-date review.

Authors:  Matteo Ferro; Ottavio de Cobelli; Gennaro Musi; Francesco Del Giudice; Giuseppe Carrieri; Gian Maria Busetto; Ugo Giovanni Falagario; Alessandro Sciarra; Martina Maggi; Felice Crocetto; Biagio Barone; Vincenzo Francesco Caputo; Michele Marchioni; Giuseppe Lucarelli; Ciro Imbimbo; Francesco Alessandro Mistretta; Stefano Luzzago; Mihai Dorin Vartolomei; Luigi Cormio; Riccardo Autorino; Octavian Sabin Tătaru
Journal:  Ther Adv Urol       Date:  2022-07-04

Review 8.  Radiation Oncology: Future Vision for Quality Assurance and Data Management in Clinical Trials and Translational Science.

Authors:  Linda Ding; Carla Bradford; I-Lin Kuo; Yankhua Fan; Kenneth Ulin; Abdulnasser Khalifeh; Suhong Yu; Fenghong Liu; Jonathan Saleeby; Harry Bushe; Koren Smith; Camelia Bianciu; Salvatore LaRosa; Fred Prior; Joel Saltz; Ashish Sharma; Mark Smyczynski; Maryann Bishop-Jodoin; Fran Laurie; Matthew Iandoli; Janaki Moni; M Giulia Cicchetti; Thomas J FitzGerald
Journal:  Front Oncol       Date:  2022-08-10       Impact factor: 5.738

9.  Technologic optimization of a virtual disease focused panel during the COVID pandemic and beyond.

Authors:  Mohammed Saleh; Priya Bhosale; Dheeraj Reddy Gopireddy; Malak Itani; Samuel Galgano; Ajaykumar Morani
Journal:  Abdom Radiol (NY)       Date:  2021-03-16

10.  COVID-19, AI enthusiasts, and toy datasets: radiology without radiologists.

Authors:  H R Tizhoosh; Jennifer Fratesi
Journal:  Eur Radiol       Date:  2020-11-11       Impact factor: 7.034

  10 in total

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