Literature DB >> 24109929

TCIA: An information resource to enable open science.

Fred W Prior, Ken Clark, Paul Commean, John Freymann, Carl Jaffe, Justin Kirby, Stephen Moore, Kirk Smith, Lawrence Tarbox, Bruce Vendt, Guillermo Marquez.   

Abstract

Reusable, publicly available data is a pillar of open science. The Cancer Imaging Archive (TCIA) is an open image archive service supporting cancer research. TCIA collects, de-identifies, curates and manages rich collections of oncology image data. Image data sets have been contributed by 28 institutions and additional image collections are underway. Since June of 2011, more than 2,000 users have registered to search and access data from this freely available resource. TCIA encourages and supports cancer-related open science communities by hosting and managing the image archive, providing project wiki space and searchable metadata repositories. The success of TCIA is measured by the number of active research projects it enables (>40) and the number of scientific publications and presentations that are produced using data from TCIA collections (39).

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Year:  2013        PMID: 24109929      PMCID: PMC4257783          DOI: 10.1109/EMBC.2013.6609742

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  20 in total

1.  Open science is a research accelerator.

Authors:  Michael Woelfle; Piero Olliaro; Matthew H Todd
Journal:  Nat Chem       Date:  2011-09-23       Impact factor: 24.427

2.  Imaging and genomics: is there a synergy?

Authors:  C Carl Jaffe
Journal:  Radiology       Date:  2012-08       Impact factor: 11.105

3.  Mining the draft human genome.

Authors:  E Birney; A Bateman; M E Clamp; T J Hubbard
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

4.  Managing and Querying Image Annotation and Markup in XML.

Authors:  Fusheng Wang; Tony Pan; Ashish Sharma; Joel Saltz
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-01-01

5.  Big data: The future of biocuration.

Authors:  Doug Howe; Maria Costanzo; Petra Fey; Takashi Gojobori; Linda Hannick; Winston Hide; David P Hill; Renate Kania; Mary Schaeffer; Susan St Pierre; Simon Twigger; Owen White; Seung Yon Rhee
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

6.  Collecting 48,000 CT exams for the lung screening study of the National Lung Screening Trial.

Authors:  Kenneth W Clark; David S Gierada; Guillermo Marquez; Stephen M Moore; David R Maffitt; Joan D Moulton; Mary A Wolfsberger; Paul Koppel; Stanley R Phillips; Fred W Prior
Journal:  J Digit Imaging       Date:  2008-09-06       Impact factor: 4.056

7.  A novel volume-age-KPS (VAK) glioblastoma classification identifies a prognostic cognate microRNA-gene signature.

Authors:  Pascal O Zinn; Pratheesh Sathyan; Bhanu Mahajan; John Bruyere; Monika Hegi; Sadhan Majumder; Rivka R Colen
Journal:  PLoS One       Date:  2012-08-03       Impact factor: 3.240

8.  Radiogenomic mapping of edema/cellular invasion MRI-phenotypes in glioblastoma multiforme.

Authors:  Pascal O Zinn; Bhanu Mahajan; Bhanu Majadan; Pratheesh Sathyan; Sanjay K Singh; Sadhan Majumder; Ferenc A Jolesz; Rivka R Colen
Journal:  PLoS One       Date:  2011-10-05       Impact factor: 3.240

9.  The caBIG annotation and image Markup project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Kastubh Sepukar; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2009-03-18       Impact factor: 4.056

10.  DICOM structured reporting and cancer clinical trials results.

Authors:  David A Clunie
Journal:  Cancer Inform       Date:  2007-05-12
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  41 in total

1.  De-identification of Medical Images with Retention of Scientific Research Value.

Authors:  Stephen M Moore; David R Maffitt; Kirk E Smith; Justin S Kirby; Kenneth W Clark; John B Freymann; Bruce A Vendt; Lawrence R Tarbox; Fred W Prior
Journal:  Radiographics       Date:  2015 May-Jun       Impact factor: 5.333

2.  A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop.

Authors:  Curtis P Langlotz; Bibb Allen; Bradley J Erickson; Jayashree Kalpathy-Cramer; Keith Bigelow; Tessa S Cook; Adam E Flanders; Matthew P Lungren; David S Mendelson; Jeffrey D Rudie; Ge Wang; Krishna Kandarpa
Journal:  Radiology       Date:  2019-04-16       Impact factor: 11.105

3.  Open access image repositories: high-quality data to enable machine learning research.

Authors:  F Prior; J Almeida; P Kathiravelu; T Kurc; K Smith; T J Fitzgerald; J Saltz
Journal:  Clin Radiol       Date:  2019-04-28       Impact factor: 2.350

4.  "RADIOTRANSCRIPTOMICS": A synergy of imaging and transcriptomics in clinical assessment.

Authors:  Amal Katrib; William Hsu; Alex Bui; Yi Xing
Journal:  Quant Biol       Date:  2016-03-04

5.  Morphologic Features on MR Imaging Classify Multifocal Glioblastomas in Different Prognostic Groups.

Authors:  J Pérez-Beteta; D Molina-García; M Villena; M J Rodríguez; C Velásquez; J Martino; B Meléndez-Asensio; Á Rodríguez de Lope; R Morcillo; J M Sepúlveda; A Hernández-Laín; A Ramos; J A Barcia; P C Lara; D Albillo; A Revert; E Arana; V M Pérez-García
Journal:  AJNR Am J Neuroradiol       Date:  2019-03-28       Impact factor: 3.825

Review 6.  Head and Neck Cancer Adaptive Radiation Therapy (ART): Conceptual Considerations for the Informed Clinician.

Authors:  Jolien Heukelom; Clifton David Fuller
Journal:  Semin Radiat Oncol       Date:  2019-07       Impact factor: 5.934

7.  Overview of the American Society for Radiation Oncology-National Institutes of Health-American Association of Physicists in Medicine Workshop 2015: Exploring Opportunities for Radiation Oncology in the Era of Big Data.

Authors:  Stanley H Benedict; Karen Hoffman; Mary K Martel; Amy P Abernethy; Anthony L Asher; Jacek Capala; Ronald C Chen; Bhisham Chera; Jennifer Couch; James Deye; Jason A Efstathiou; Eric Ford; Benedick A Fraass; Peter E Gabriel; Vojtech Huser; Brian D Kavanagh; Deepak Khuntia; Lawrence B Marks; Charles Mayo; Todd McNutt; Robert S Miller; Kevin L Moore; Fred Prior; Erik Roelofs; Barry S Rosenstein; Jeff Sloan; Anna Theriault; Bhadrasain Vikram
Journal:  Int J Radiat Oncol Biol Phys       Date:  2016-07-01       Impact factor: 7.038

8.  A Query Tool for Investigator Access to the Data and Images of the National Lung Screening Trial.

Authors:  Paul K Commean; Joshua M Rathmell; Ken W Clark; Dave R Maffitt; Fred W Prior
Journal:  J Digit Imaging       Date:  2015-08       Impact factor: 4.056

9.  Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive.

Authors:  Jayashree Kalpathy-Cramer; John Blake Freymann; Justin Stephen Kirby; Paul Eugene Kinahan; Fred William Prior
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

10.  Big data in oncologic imaging.

Authors:  Daniele Regge; Simone Mazzetti; Valentina Giannini; Christian Bracco; Michele Stasi
Journal:  Radiol Med       Date:  2016-09-13       Impact factor: 3.469

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