Literature DB >> 29063549

An Assessment of Imaging Informatics for Precision Medicine in Cancer.

C Chennubhotla, L P Clarke, A Fedorov, D Foran, G Harris, E Helton, R Nordstrom, F Prior, D Rubin, J H Saltz, E Shalley, A Sharma.   

Abstract

Objectives: Precision medicine requires the measurement, quantification, and cataloging of medical characteristics to identify the most effective medical intervention. However, the amount of available data exceeds our current capacity to extract meaningful information. We examine the informatics needs to achieve precision medicine from the perspective of quantitative imaging and oncology.
Methods: The National Cancer Institute (NCI) organized several workshops on the topic of medical imaging and precision medicine. The observations and recommendations are summarized herein.
Results: Recommendations include: use of standards in data collection and clinical correlates to promote interoperability; data sharing and validation of imaging tools; clinician's feedback in all phases of research and development; use of open-source architecture to encourage reproducibility and reusability; use of challenges which simulate real-world situations to incentivize innovation; partnership with industry to facilitate commercialization; and education in academic communities regarding the challenges involved with translation of technology from the research domain to clinical utility and the benefits of doing so. Conclusions: This article provides a survey of the role and priorities for imaging informatics to help advance quantitative imaging in the era of precision medicine. While these recommendations were drawn from oncology, they are relevant and applicable to other clinical domains where imaging aids precision medicine. Georg Thieme Verlag KG Stuttgart.

Entities:  

Mesh:

Year:  2017        PMID: 29063549      PMCID: PMC6250996          DOI: 10.15265/IY-2017-041

Source DB:  PubMed          Journal:  Yearb Med Inform        ISSN: 0943-4747


  91 in total

1.  Imaging in the Age of Precision Medicine: Summary of the Proceedings of the 10th Biannual Symposium of the International Society for Strategic Studies in Radiology.

Authors:  Christian J Herold; Jonathan S Lewin; Andreas G Wibmer; James H Thrall; Gabriel P Krestin; Adrian K Dixon; Stefan O Schoenberg; Rena J Geckle; Ada Muellner; Hedvig Hricak
Journal:  Radiology       Date:  2015-10-13       Impact factor: 11.105

2.  Automated segmentation of the melanocytes in skin histopathological images.

Authors:  Cheng Lu; Muhammad Mahmood; Naresh Jha; Mrinal Mandal
Journal:  IEEE J Biomed Health Inform       Date:  2012-05-16       Impact factor: 5.772

Review 3.  Role of Imaging in the Era of Precision Medicine.

Authors:  Angela Giardino; Supriya Gupta; Emmi Olson; Karla Sepulveda; Leon Lenchik; Jana Ivanidze; Rebecca Rakow-Penner; Midhir J Patel; Rathan M Subramaniam; Dhakshinamoorthy Ganeshan
Journal:  Acad Radiol       Date:  2017-01-25       Impact factor: 3.173

4.  Breast cancer subtype intertumor heterogeneity: MRI-based features predict results of a genomic assay.

Authors:  Elizabeth J Sutton; Jung Hun Oh; Brittany Z Dashevsky; Harini Veeraraghavan; Aditya P Apte; Sunitha B Thakur; Joseph O Deasy; Elizabeth A Morris
Journal:  J Magn Reson Imaging       Date:  2015-04-07       Impact factor: 4.813

5.  Lung extraction, lobe segmentation and hierarchical region assessment for quantitative analysis on high resolution computed tomography images.

Authors:  James C Ross; Raúl San José Estépar; Alejandro Díaz; Carl-Fredrik Westin; Ron Kikinis; Edwin K Silverman; George R Washko
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

6.  Automatic delineation of the myocardial wall from CT images via shape segmentation and variational region growing.

Authors:  Liangjia Zhu; Yi Gao; Vikram Appia; Anthony Yezzi; Chesnal Arepalli; Tracy Faber; Arthur Stillman; Allen Tannenbaum
Journal:  IEEE Trans Biomed Eng       Date:  2013-06-04       Impact factor: 4.538

7.  Accurate and robust brain image alignment using boundary-based registration.

Authors:  Douglas N Greve; Bruce Fischl
Journal:  Neuroimage       Date:  2009-06-30       Impact factor: 6.556

8.  MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set.

Authors:  David A Gutman; Lee A D Cooper; Scott N Hwang; Chad A Holder; Jingjing Gao; Tarun D Aurora; William D Dunn; Lisa Scarpace; Tom Mikkelsen; Rajan Jain; Max Wintermark; Manal Jilwan; Prashant Raghavan; Erich Huang; Robert J Clifford; Pattanasak Mongkolwat; Vladimir Kleper; John Freymann; Justin Kirby; Pascal O Zinn; Carlos S Moreno; Carl Jaffe; Rivka Colen; Daniel L Rubin; Joel Saltz; Adam Flanders; Daniel J Brat
Journal:  Radiology       Date:  2013-02-07       Impact factor: 11.105

9.  Content-based histopathology image retrieval using CometCloud.

Authors:  Xin Qi; Daihou Wang; Ivan Rodero; Javier Diaz-Montes; Rebekah H Gensure; Fuyong Xing; Hua Zhong; Lauri Goodell; Manish Parashar; David J Foran; Lin Yang
Journal:  BMC Bioinformatics       Date:  2014-08-26       Impact factor: 3.169

10.  Identifying survival associated morphological features of triple negative breast cancer using multiple datasets.

Authors:  Chao Wang; Thierry Pécot; Debra L Zynger; Raghu Machiraju; Charles L Shapiro; Kun Huang
Journal:  J Am Med Inform Assoc       Date:  2013-04-12       Impact factor: 4.497

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  6 in total

Review 1.  Sensor, Signal, and Imaging Informatics.

Authors:  W Hsu; S Park; Charles E Kahn
Journal:  Yearb Med Inform       Date:  2017-09-11

Review 2.  Multiplex Immunofluorescence and the Digital Image Analysis Workflow for Evaluation of the Tumor Immune Environment in Translational Research.

Authors:  Frank Rojas; Sharia Hernandez; Rossana Lazcano; Caddie Laberiano-Fernandez; Edwin Roger Parra
Journal:  Front Oncol       Date:  2022-06-27       Impact factor: 5.738

3.  Impact of sex, body mass index and initial pathologic diagnosis age on the incidence and prognosis of different types of cancer.

Authors:  Xuan Huang; Chuanjun Shu; Li Chen; Bing Yao
Journal:  Oncol Rep       Date:  2018-06-27       Impact factor: 3.906

4.  An annotated test-retest collection of prostate multiparametric MRI.

Authors:  Andriy Fedorov; Michael Schwier; David Clunie; Christian Herz; Steve Pieper; Ron Kikinis; Clare Tempany; Fiona Fennessy
Journal:  Sci Data       Date:  2018-12-04       Impact factor: 6.444

5.  Enhancing Clinical Data and Clinical Research Data with Biomedical Ontologies - Insights from the Knowledge Representation Perspective.

Authors:  Jonathan P Bona; Fred W Prior; Meredith N Zozus; Mathias Brochhausen
Journal:  Yearb Med Inform       Date:  2019-08-16

6.  An Expandable Informatics Framework for Enhancing Central Cancer Registries with Digital Pathology Specimens, Computational Imaging Tools, and Advanced Mining Capabilities.

Authors:  David J Foran; Eric B Durbin; Wenjin Chen; Evita Sadimin; Ashish Sharma; Imon Banerjee; Tahsin Kurc; Nan Li; Antoinette M Stroup; Gerald Harris; Annie Gu; Maria Schymura; Rajarsi Gupta; Erich Bremer; Joseph Balsamo; Tammy DiPrima; Feiqiao Wang; Shahira Abousamra; Dimitris Samaras; Isaac Hands; Kevin Ward; Joel H Saltz
Journal:  J Pathol Inform       Date:  2022-01-05
  6 in total

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