Literature DB >> 24686245

Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Yonggang Shi, Rongjie Lai, Danny J J Wang, Daniel Pelletier, David Mohr, Nancy Sicotte, Arthur W Toga.   

Abstract

In this paper, we present a novel approach for the intrinsic mapping of anatomical surfaces and its application in brain mapping research. Using the Laplace-Beltrami eigen-system, we represent each surface with an isometry invariant embedding in a high dimensional space. The key idea in our system is that we realize surface deformation in the embedding space via the iterative optimization of a conformal metric without explicitly perturbing the surface or its embedding. By minimizing a distance measure in the embedding space with metric optimization, our method generates a conformal map directly between surfaces with highly uniform metric distortion and the ability of aligning salient geometric features. Besides pairwise surface maps, we also extend the metric optimization approach for group-wise atlas construction and multi-atlas cortical label fusion. In experimental results, we demonstrate the robustness and generality of our method by applying it to map both cortical and hippocampal surfaces in population studies. For cortical labeling, our method achieves excellent performance in a cross-validation experiment with 40 manually labeled surfaces, and successfully models localized brain development in a pediatric study of 80 subjects. For hippocampal mapping, our method produces much more significant results than two popular tools on a multiple sclerosis study of 109 subjects.

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Year:  2014        PMID: 24686245      PMCID: PMC4079755          DOI: 10.1109/TMI.2014.2313812

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  40 in total

1.  Conformal mapping via metric optimization with application for cortical label fusion.

Authors:  Yonggang Shi; Rongjie Lai; Arthur W Toga
Journal:  Inf Process Med Imaging       Date:  2013

2.  Construction of a 3D probabilistic atlas of human cortical structures.

Authors:  David W Shattuck; Mubeena Mirza; Vitria Adisetiyo; Cornelius Hojatkashani; Georges Salamon; Katherine L Narr; Russell A Poldrack; Robert M Bilder; Arthur W Toga
Journal:  Neuroimage       Date:  2007-11-26       Impact factor: 6.556

3.  Computing geodesic paths on manifolds.

Authors:  R Kimmel; J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

4.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

5.  Brain surface conformal parameterization with the Ricci flow.

Authors:  Yalin Wang; Jie Shi; Xiaotian Yin; Xianfeng Gu; Tony F Chan; Shing-Tung Yau; Arthur W Toga; Paul M Thompson
Journal:  IEEE Trans Med Imaging       Date:  2011-09-15       Impact factor: 10.048

6.  Building 3-D statistical shape models by direct optimization.

Authors:  Rhodri H Davies; Carole J Twining; Timothy F Cootes; Chris J Taylor
Journal:  IEEE Trans Med Imaging       Date:  2009-11-03       Impact factor: 10.048

7.  Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons.

Authors:  Yonggang Shi; Rongjie Lai; Sheila Krishna; Nancy Sicotte; Ivo Dinov; Arthur W Toga
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2008-07-15

8.  WESD--Weighted Spectral Distance for measuring shape dissimilarity.

Authors:  Ender Konukoglu; Ben Glocker; Antonio Criminisi; Kilian M Pohl
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-09       Impact factor: 6.226

9.  FOCUSR: feature oriented correspondence using spectral regularization--a method for precise surface matching.

Authors:  Herve Lombaert; Leo Grady; Jonathan R Polimeni; Farida Cheriet
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-09       Impact factor: 6.226

10.  Cortical surface reconstruction via unified Reeb analysis of geometric and topological outliers in magnetic resonance images.

Authors:  Yonggang Shi; Rongjie Lai; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2013-03       Impact factor: 10.048

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  18 in total

1.  Riemannian Metric Optimization for Connectivity-driven Surface Mapping.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

2.  Hippocampal Shape Maturation in Childhood and Adolescence.

Authors:  Kirsten M Lynch; Yonggang Shi; Arthur W Toga; Kristi A Clark
Journal:  Cereb Cortex       Date:  2019-08-14       Impact factor: 5.357

3.  Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Anal       Date:  2018-03-16       Impact factor: 8.545

4.  3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography Images.

Authors:  Jiong Zhang; Yuchuan Qiao; Mona Sharifi Sarabi; Maziyar M Khansari; Jin K Gahm; Amir H Kashani; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2019-10-22       Impact factor: 10.048

5.  Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging.

Authors:  Giang Tran; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2015-05-07       Impact factor: 10.048

6.  Development of the human fetal hippocampal formation during early second trimester.

Authors:  Xinting Ge; Yonggang Shi; Junning Li; Zhonghe Zhang; Xiangtao Lin; Jinfeng Zhan; Haitao Ge; Junhai Xu; Qiaowen Yu; Yuan Leng; Gaojun Teng; Lei Feng; Haiwei Meng; Yuchun Tang; Fengchao Zang; Arthur W Toga; Shuwei Liu
Journal:  Neuroimage       Date:  2015-06-26       Impact factor: 6.556

7.  Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding Space.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

8.  Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures.

Authors:  Gang Wang; Yalin Wang
Journal:  Neuroimage       Date:  2016-12-26       Impact factor: 6.556

9.  A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes.

Authors:  Boris A Gutman; P Thomas Fletcher; M Jorge Cardoso; Greg M Fleishman; Marco Lorenzi; Paul M Thompson; Sebastien Ourselin
Journal:  Inf Process Med Imaging       Date:  2015

10.  Medial Demons Registration Localizes The Degree of Genetic Influence Over Subcortical Shape Variability: An N= 1480 Meta-Analysis.

Authors:  Boris A Gutman; Neda Jahanshad; Christopher R K Ching; Yalin Wang; Peter V Kochunov; Thomas E Nichols; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2015-04
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