Literature DB >> 21339850

Anisotropic Laplace-Beltrami Eigenmaps: Bridging Reeb Graphs and Skeletons.

Yonggang Shi1, Rongjie Lai, Sheila Krishna, Nancy Sicotte, Ivo Dinov, Arthur W Toga.   

Abstract

In this paper we propose a novel approach of computing skeletons of robust topology for simply connected surfaces with boundary by constructing Reeb graphs from the eigenfunctions of an anisotropic Laplace-Beltrami operator. Our work brings together the idea of Reeb graphs and skeletons by incorporating a flux-based weight function into the Laplace-Beltrami operator. Based on the intrinsic geometry of the surface, the resulting Reeb graph is pose independent and captures the global profile of surface geometry. Our algorithm is very efficient and it only takes several seconds to compute on neuroanatomical structures such as the cingulate gyrus and corpus callosum. In our experiments, we show that the Reeb graphs serve well as an approximate skeleton with consistent topology while following the main body of conventional skeletons quite accurately.

Entities:  

Year:  2008        PMID: 21339850      PMCID: PMC3041984          DOI: 10.1109/CVPRW.2008.4563018

Source DB:  PubMed          Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit        ISSN: 1063-6919


  9 in total

1.  Segmentation, registration, and measurement of shape variation via image object shape.

Authors:  S M Pizer; D S Fritsch; P A Yushkevich; V E Johnson; E L Chaney
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  Continuous medial representation for anatomical structures.

Authors:  Paul A Yushkevich; Hui Zhang; James C Gee
Journal:  IEEE Trans Med Imaging       Date:  2006-12       Impact factor: 10.048

3.  Smooth functional and structural maps on the neocortex via orthonormal bases of the Laplace-Beltrami operator.

Authors:  Anqi Qiu; Dmitri Bitouk; Michael I Miller
Journal:  IEEE Trans Med Imaging       Date:  2006-10       Impact factor: 10.048

4.  Global medical shape analysis using the Laplace-Beltrami spectrum.

Authors:  Marc Niethammer; Martin Reuter; Franz-Erich Wolter; Sylvain Bouix; Niklas Peinecke; Min-Seong Koo; Martha E Shenton
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

5.  Statistical shape analysis of neuroanatomical structures based on medial models.

Authors:  M Styner; G Gerig; J Lieberman; D Jones; D Weinberger
Journal:  Med Image Anal       Date:  2003-09       Impact factor: 8.545

6.  Hamilton-Jacobi skeleton on cortical surfaces.

Authors:  Y Shi; P M Thompson; I Dinov; A W Toga
Journal:  IEEE Trans Med Imaging       Date:  2008-05       Impact factor: 10.048

7.  Computing geodesic paths on manifolds.

Authors:  R Kimmel; J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

8.  Hippocampal shape analysis using medial surfaces.

Authors:  Sylvain Bouix; Jens C Pruessner; D Louis Collins; Kaleem Siddiqi
Journal:  Neuroimage       Date:  2005-05-01       Impact factor: 6.556

9.  Mapping hippocampal and ventricular change in Alzheimer disease.

Authors:  Paul M Thompson; Kiralee M Hayashi; Greig I De Zubicaray; Andrew L Janke; Stephen E Rose; James Semple; Michael S Hong; David H Herman; David Gravano; David M Doddrell; Arthur W Toga
Journal:  Neuroimage       Date:  2004-08       Impact factor: 6.556

  9 in total
  15 in total

1.  Cortical shape analysis in the Laplace-Beltrami feature space.

Authors:  Yonggang Shi; Ivo Dinov; Arthur W Toga
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

2.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

3.  Automated sulci identification via intrinsic modeling of cortical anatomy.

Authors:  Yonggang Shi; Bo Sun; Rongjie Lai; Ivo Dinov; Arthur W Toga
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

4.  LAPLACE-BELTRAMI NODAL COUNTS: A NEW SIGNATURE FOR 3D SHAPE ANALYSIS.

Authors:  Rongjie Lai; Yonggang Shi; Ivo Dinov; Tony F Chan; Arthur W Toga
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009-08-07

5.  Hot Spots Conjecture and Its Application to Modeling Tubular Structures.

Authors:  Moo K Chung; Seongho Seo; Nagesh Adluru; Houri K Vorperian
Journal:  Mach Learn Med Imaging       Date:  2011-09

6.  Hippocampal Shape Maturation in Childhood and Adolescence.

Authors:  Kirsten M Lynch; Yonggang Shi; Arthur W Toga; Kristi A Clark
Journal:  Cereb Cortex       Date:  2019-08-14       Impact factor: 5.357

7.  Robust surface reconstruction via Laplace-Beltrami eigen-projection and boundary deformation.

Authors:  Yonggang Shi; Rongjie Lai; Jonathan H Morra; Ivo Dinov; Paul M Thompson; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2010-07-12       Impact factor: 10.048

8.  Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Anal       Date:  2018-03-16       Impact factor: 8.545

9.  Developmental changes in hippocampal shape among preadolescent children.

Authors:  Muqing Lin; Peter T Fwu; Claudia Buss; Elysia P Davis; Kevin Head; L Tugan Muftuler; Curt A Sandman; Min-Ying Su
Journal:  Int J Dev Neurosci       Date:  2013-06-14       Impact factor: 2.457

10.  Active fibers: matching deformable tract templates to diffusion tensor images.

Authors:  Ilya Eckstein; David W Shattuck; Jason L Stein; Katie L McMahon; Greig de Zubicaray; Margaret J Wright; Paul M Thompson; Arthur W Toga
Journal:  Neuroimage       Date:  2009-02-11       Impact factor: 6.556

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