Literature DB >> 23868776

FOCUSR: feature oriented correspondence using spectral regularization--a method for precise surface matching.

Herve Lombaert1, Leo Grady, Jonathan R Polimeni, Farida Cheriet.   

Abstract

Existing methods for surface matching are limited by the tradeoff between precision and computational efficiency. Here, we present an improved algorithm for dense vertex-to-vertex correspondence that uses direct matching of features defined on a surface and improves it by using spectral correspondence as a regularization. This algorithm has the speed of both feature matching and spectral matching while exhibiting greatly improved precision (distance errors of 1.4 percent). The method, FOCUSR, incorporates implicitly such additional features to calculate the correspondence and relies on the smoothness of the lowest-frequency harmonics of a graph Laplacian to spatially regularize the features. In its simplest form, FOCUSR is an improved spectral correspondence method that nonrigidly deforms spectral embeddings. We provide here a full realization of spectral correspondence where virtually any feature can be used as an additional information using weights on graph edges, but also on graph nodes and as extra embedded coordinates. As an example, the full power of FOCUSR is demonstrated in a real-case scenario with the challenging task of brain surface matching across several individuals. Our results show that combining features and regularizing them in a spectral embedding greatly improves the matching precision (to a submillimeter level) while performing at much greater speed than existing methods.

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Year:  2013        PMID: 23868776      PMCID: PMC3707975          DOI: 10.1109/TPAMI.2012.276

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  23 in total

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Authors:  M A Audette; F P Ferrie; T M Peters
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2.  Spectral grouping using the Nyström method.

Authors:  Charless Fowlkes; Serge Belongie; Fan Chung; Jitendra Malik
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-02       Impact factor: 6.226

3.  Cortical shape analysis in the Laplace-Beltrami feature space.

Authors:  Yonggang Shi; Ivo Dinov; Arthur W Toga
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4.  Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex.

Authors:  B T Thomas Yeo; Mert R Sabuncu; Tom Vercauteren; Daphne J Holt; Katrin Amunts; Karl Zilles; Polina Golland; Bruce Fischl
Journal:  IEEE Trans Med Imaging       Date:  2010-06-07       Impact factor: 10.048

5.  Generalized multidimensional scaling: a framework for isometry-invariant partial surface matching.

Authors:  Alexander M Bronstein; Michael M Bronstein; Ron Kimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

6.  An algorithm for associating the features of two images.

Authors:  G L Scott; H C Longuet-Higgins
Journal:  Proc Biol Sci       Date:  1991-04-22       Impact factor: 5.349

7.  Automated sulci identification via intrinsic modeling of cortical anatomy.

Authors:  Yonggang Shi; Bo Sun; Rongjie Lai; Ivo Dinov; Arthur W Toga
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8.  Calculus of nonrigid surfaces for geometry and texture manipulation.

Authors:  Alexander Bronstein; Michael Bronstein; Ron Kimmel
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Sep-Oct       Impact factor: 4.579

9.  Fast brain matching with spectral correspondence.

Authors:  Herve Lombaert; Leo Grady; Jonathan R Polimeni; Farida Cheriet
Journal:  Inf Process Med Imaging       Date:  2011

10.  Laplace-Beltrami Eigenvalues and Topological Features of Eigenfunctions for Statistical Shape Analysis.

Authors:  Martin Reuter; Franz-Erich Wolter; Martha Shenton; Marc Niethammer
Journal:  Comput Aided Des       Date:  2009-10-01       Impact factor: 3.027

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  25 in total

1.  A novel approach to multiple anatomical shape analysis: Application to fetal ventriculomegaly.

Authors:  Oualid Benkarim; Gemma Piella; Islem Rekik; Nadine Hahner; Elisenda Eixarch; Dinggang Shen; Gang Li; Miguel Angel González Ballester; Gerard Sanroma
Journal:  Med Image Anal       Date:  2020-06-10       Impact factor: 8.545

2.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

3.  Impact of Early and Late Visual Deprivation on the Structure of the Corpus Callosum: A Study Combining Thickness Profile with Surface Tensor-Based Morphometry.

Authors:  Natasha Leporé; Yalin Wang; Jie Shi; Olivier Collignon; Liang Xu; Gang Wang; Yue Kang; Franco Leporé; Yi Lao; Anand A Joshi
Journal:  Neuroinformatics       Date:  2015-07

4.  BrainSpace: a toolbox for the analysis of macroscale gradients in neuroimaging and connectomics datasets.

Authors:  Reinder Vos de Wael; Oualid Benkarim; Jonathan Smallwood; Boris C Bernhardt; Casey Paquola; Sara Lariviere; Jessica Royer; Shahin Tavakol; Ting Xu; Seok-Jun Hong; Georg Langs; Sofie Valk; Bratislav Misic; Michael Milham; Daniel Margulies
Journal:  Commun Biol       Date:  2020-03-05

5.  Unsupervised fetal cortical surface parcellation.

Authors:  Sonia Dahdouh; Catherine Limperopoulos
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

6.  Vessel-based registration of an optical shape sensing catheter for MR navigation.

Authors:  Koushik Mandal; Francois Parent; Sylvain Martel; Raman Kashyap; Samuel Kadoury
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-03-16       Impact factor: 2.924

7.  Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Anal       Date:  2018-03-16       Impact factor: 8.545

8.  A novel cortical thickness estimation method based on volumetric Laplace-Beltrami operator and heat kernel.

Authors:  Gang Wang; Xiaofeng Zhang; Qingtang Su; Jie Shi; Richard J Caselli; Yalin Wang
Journal:  Med Image Anal       Date:  2015-02-03       Impact factor: 8.545

9.  Multidirectional and Topography-based Dynamic-scale Varifold Representations with Application to Matching Developing Cortical Surfaces.

Authors:  Islem Rekik; Gang Li; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2016-04-30       Impact factor: 6.556

10.  Three-dimensional MRI-based statistical shape model and application to a cohort of knees with acute ACL injury.

Authors:  V Pedoia; D A Lansdown; M Zaid; C E McCulloch; R Souza; C B Ma; X Li
Journal:  Osteoarthritis Cartilage       Date:  2015-06-05       Impact factor: 6.576

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