Literature DB >> 24683973

Conformal mapping via metric optimization with application for cortical label fusion.

Yonggang Shi, Rongjie Lai, Arthur W Toga.   

Abstract

In this paper we develop a novel approach for computing conformal maps between anatomical surfaces with the ability of aligning anatomical features and achieving greatly reduced metric distortion. In contrast to conventional approaches that focused on conformal maps to the sphere or plane, our method computes the conformal map between surfaces in the embedding space formed the intrinsically defined Laplace-Beltrami (LB) eigenfunctions. Utilizing the power of LB eigenfunctions as informative descriptors of global geometry, the conformal maps computed by our method can effectively align anatomical features on cortical surfaces. By computing such feature-aware conformal maps to a group-wisely optimal atlas surface, which is also computed with metric optimization in the LB embedding space, we develop a fully automated system for cortical labeling with the fusion of labels on a large number of atlas surfaces. In our experiments, we build our system with 40 labeled surfaces and demonstrate its excellent performance with leave-one-out cross validation. We also applied the automated labeling system to cortical surfaces reconstructed from MR scans of 50 patients with Alzheimer's disease (AD) and 50 normal controls (NC) to illustrate its robustness and effectiveness in clinical data analysis.

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Year:  2013        PMID: 24683973      PMCID: PMC4020152          DOI: 10.1007/978-3-642-38868-2_21

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  16 in total

1.  Genus zero surface conformal mapping and its application to brain surface mapping.

Authors:  Xianfeng Gu; Yalin Wang; Tony F Chan; Paul M Thompson; Shing-Tung Yau
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

2.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

3.  Conformal metric optimization on surface (CMOS) for deformation and mapping in Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Raja Gill; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

4.  AUTOMATED RELIABLE LABELING OF THE CORTICAL SURFACE.

Authors:  Jing Wan; Aaron Carass; Susan M Resnick; Jerry L Prince
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2008-05-14

5.  Construction of a 3D probabilistic atlas of human cortical structures.

Authors:  David W Shattuck; Mubeena Mirza; Vitria Adisetiyo; Cornelius Hojatkashani; Georges Salamon; Katherine L Narr; Russell A Poldrack; Robert M Bilder; Arthur W Toga
Journal:  Neuroimage       Date:  2007-11-26       Impact factor: 6.556

6.  Evaluation of volume-based and surface-based brain image registration methods.

Authors:  Arno Klein; Satrajit S Ghosh; Brian Avants; B T T Yeo; Bruce Fischl; Babak Ardekani; James C Gee; J J Mann; Ramin V Parsey
Journal:  Neuroimage       Date:  2010-02-01       Impact factor: 6.556

7.  Robust surface reconstruction via Laplace-Beltrami eigen-projection and boundary deformation.

Authors:  Yonggang Shi; Rongjie Lai; Jonathan H Morra; Ivo Dinov; Paul M Thompson; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2010-07-12       Impact factor: 10.048

Review 8.  The Alzheimer's disease neuroimaging initiative.

Authors:  Susanne G Mueller; Michael W Weiner; Leon J Thal; Ronald C Petersen; Clifford Jack; William Jagust; John Q Trojanowski; Arthur W Toga; Laurel Beckett
Journal:  Neuroimaging Clin N Am       Date:  2005-11       Impact factor: 2.264

9.  Spherical demons: fast diffeomorphic landmark-free surface registration.

Authors:  B T Thomas Yeo; Mert R Sabuncu; Tom Vercauteren; Nicholas Ayache; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2009-08-25       Impact factor: 10.048

10.  Cortical surface reconstruction via unified Reeb analysis of geometric and topological outliers in magnetic resonance images.

Authors:  Yonggang Shi; Rongjie Lai; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2013-03       Impact factor: 10.048

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  6 in total

1.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

2.  Simultaneous and consistent labeling of longitudinal dynamic developing cortical surfaces in infants.

Authors:  Gang Li; Li Wang; Feng Shi; Weili Lin; Dinggang Shen
Journal:  Med Image Anal       Date:  2014-06-25       Impact factor: 8.545

3.  A volumetric conformal mapping approach for clustering white matter fibers in the brain.

Authors:  Vikash Gupta; Gautam Prasad; Paul Thompson
Journal:  Spectr Shape Anal Med Imaging (2016)       Date:  2016-12-11

4.  Persistent Reeb Graph Matching for Fast Brain Search.

Authors:  Yonggang Shi; Junning Li; Arthur W Toga
Journal:  Mach Learn Med Imaging       Date:  2014

Review 5.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

6.  Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies.

Authors:  Ilwoo Lyu; Sun H Kim; Joon-Kyung Seong; Sang W Yoo; Alan Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Front Neurosci       Date:  2015-06-11       Impact factor: 4.677

  6 in total

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