Literature DB >> 26221675

A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes.

Boris A Gutman, P Thomas Fletcher, M Jorge Cardoso, Greg M Fleishman, Marco Lorenzi, Paul M Thompson, Sebastien Ourselin.   

Abstract

We present a framework for intrinsic comparison of surface metric structures and curvatures. This work parallels the work of Kurtek et al. on parameterization-invariant comparison of genus zero shapes. Here, instead of comparing the embedding of spherically parameterized surfaces in space, we focus on the first fundamental form. To ensure that the distance on spherical metric tensor fields is invariant to parameterization, we apply the conjugation-invariant metric arising from the L2 norm on symmetric positive definite matrices. As a reparameterization changes the metric tensor by a congruent Jacobian transform, this metric perfectly suits our purpose. The result is an intrinsic comparison of shape metric structure that does not depend on the specifics of a spherical mapping. Further, when restricted to tensors of fixed volume form, the manifold of metric tensor fields and its quotient of the group of unitary diffeomorphisms becomes a proper metric manifold that is geodesically complete. Exploiting this fact, and augmenting the metric with analogous metrics on curvatures, we derive a complete Riemannian framework for shape comparison and reconstruction. A by-product of our framework is a near-isometric and curvature-preserving mapping between surfaces. The correspondence is optimized using the fast spherical fluid algorithm. We validate our framework using several subcortical boundary surface models from the ADNI dataset.

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Year:  2015        PMID: 26221675      PMCID: PMC4517187          DOI: 10.1007/978-3-319-19992-4_16

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  12 in total

1.  Genus zero surface conformal mapping and its application to brain surface mapping.

Authors:  Xianfeng Gu; Yalin Wang; Tony F Chan; Paul M Thompson; Shing-Tung Yau
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

2.  Parameterization-invariant shape comparisons of anatomical surfaces.

Authors:  Sebastian Kurtek; Eric Klassen; Zhaohua Ding; Sandra W Jacobson; Joseph L Jacobson; Malcolm J Avison; Anuj Srivastava
Journal:  IEEE Trans Med Imaging       Date:  2010-12-13       Impact factor: 10.048

3.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

4.  Statistical properties of Jacobian maps and the realization of unbiased large-deformation nonlinear image registration.

Authors:  Alex D Leow; Igor Yanovsky; Ming-Chang Chiang; Agatha D Lee; Andrea D Klunder; Allen Lu; James T Becker; Simon W Davis; Arthur W Toga; Paul M Thompson
Journal:  IEEE Trans Med Imaging       Date:  2007-06       Impact factor: 10.048

5.  Deformable templates using large deformation kinematics.

Authors:  G E Christensen; R D Rabbitt; M I Miller
Journal:  IEEE Trans Image Process       Date:  1996       Impact factor: 10.856

6.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

7.  Applying tensor-based morphometry to parametric surfaces can improve MRI-based disease diagnosis.

Authors:  Yalin Wang; Lei Yuan; Jie Shi; Alexander Greve; Jieping Ye; Arthur W Toga; Allan L Reiss; Paul M Thompson
Journal:  Neuroimage       Date:  2013-02-20       Impact factor: 6.556

8.  Surface fluid registration of conformal representation: application to detect disease burden and genetic influence on hippocampus.

Authors:  Jie Shi; Paul M Thompson; Boris Gutman; Yalin Wang
Journal:  Neuroimage       Date:  2013-04-13       Impact factor: 6.556

9.  The geometric median on Riemannian manifolds with application to robust atlas estimation.

Authors:  P Thomas Fletcher; Suresh Venkatasubramanian; Sarang Joshi
Journal:  Neuroimage       Date:  2008-11-13       Impact factor: 6.556

10.  Spherical demons: fast diffeomorphic landmark-free surface registration.

Authors:  B T Thomas Yeo; Mert R Sabuncu; Tom Vercauteren; Nicholas Ayache; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2009-08-25       Impact factor: 10.048

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  8 in total

1.  Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis.

Authors:  Jie Shi; Wen Zhang; Miao Tang; Richard J Caselli; Yalin Wang
Journal:  Med Image Anal       Date:  2016-09-06       Impact factor: 8.545

2.  Hyperbolic Wasserstein Distance for Shape Indexing.

Authors:  Jie Shi; Yalin Wang
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2019-02-08       Impact factor: 6.226

Review 3.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; John C Morris; Ronald C Petersen; Andrew J Saykin; Leslie M Shaw; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2017-03-22       Impact factor: 21.566

4.  Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study.

Authors:  Yanshuai Tu; Liang Mi; Wen Zhang; Haomeng Zhang; Junwei Zhang; Yonghui Fan; Dhruman Goradia; Kewei Chen; Richard J Caselli; Eric M Reiman; Xianfeng Gu; Yalin Wang
Journal:  Neuroinformatics       Date:  2020-10

5.  Shape Analysis with Hyperbolic Wasserstein Distance.

Authors:  Jie Shi; Wen Zhang; Yalin Wang
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2016-12-12

Review 6.  ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide.

Authors:  Paul M Thompson; Ole A Andreassen; Alejandro Arias-Vasquez; Carrie E Bearden; Premika S Boedhoe; Rachel M Brouwer; Randy L Buckner; Jan K Buitelaar; Kazima B Bulayeva; Dara M Cannon; Ronald A Cohen; Patricia J Conrod; Anders M Dale; Ian J Deary; Emily L Dennis; Marcel A de Reus; Sylvane Desrivieres; Danai Dima; Gary Donohoe; Simon E Fisher; Jean-Paul Fouche; Clyde Francks; Sophia Frangou; Barbara Franke; Habib Ganjgahi; Hugh Garavan; David C Glahn; Hans J Grabe; Tulio Guadalupe; Boris A Gutman; Ryota Hashimoto; Derrek P Hibar; Dominic Holland; Martine Hoogman; Hilleke E Hulshoff Pol; Norbert Hosten; Neda Jahanshad; Sinead Kelly; Peter Kochunov; William S Kremen; Phil H Lee; Scott Mackey; Nicholas G Martin; Bernard Mazoyer; Colm McDonald; Sarah E Medland; Rajendra A Morey; Thomas E Nichols; Tomas Paus; Zdenka Pausova; Lianne Schmaal; Gunter Schumann; Li Shen; Sanjay M Sisodiya; Dirk J A Smit; Jordan W Smoller; Dan J Stein; Jason L Stein; Roberto Toro; Jessica A Turner; Martijn P van den Heuvel; Odile L van den Heuvel; Theo G M van Erp; Daan van Rooij; Dick J Veltman; Henrik Walter; Yalin Wang; Joanna M Wardlaw; Christopher D Whelan; Margaret J Wright; Jieping Ye
Journal:  Neuroimage       Date:  2015-12-04       Impact factor: 6.556

7.  Heritability of the shape of subcortical brain structures in the general population.

Authors:  Gennady V Roshchupkin; Boris A Gutman; Meike W Vernooij; Neda Jahanshad; Nicholas G Martin; Albert Hofman; Katie L McMahon; Sven J van der Lee; Cornelia M van Duijn; Greig I de Zubicaray; André G Uitterlinden; Margaret J Wright; Wiro J Niessen; Paul M Thompson; M Arfan Ikram; Hieab H H Adams
Journal:  Nat Commun       Date:  2016-12-15       Impact factor: 14.919

8.  Mapping Subcortical Brain Alterations in 22q11.2 Deletion Syndrome: Effects of Deletion Size and Convergence With Idiopathic Neuropsychiatric Illness.

Authors:  Christopher R K Ching; Boris A Gutman; Daqiang Sun; Julio Villalon Reina; Anjanibhargavi Ragothaman; Dmitry Isaev; Artemis Zavaliangos-Petropulu; Amy Lin; Rachel K Jonas; Leila Kushan; Laura Pacheco-Hansen; Ariana Vajdi; Jennifer K Forsyth; Maria Jalbrzikowski; Geor Bakker; Therese van Amelsvoort; Kevin M Antshel; Wanda Fremont; Wendy R Kates; Linda E Campbell; Kathryn L McCabe; Michael C Craig; Eileen Daly; Maria Gudbrandsen; Clodagh M Murphy; Declan G Murphy; Kieran C Murphy; Ania Fiksinski; Sanne Koops; Jacob Vorstman; T Blaine Crowley; Beverly S Emanuel; Raquel E Gur; Donna M McDonald-McGinn; David R Roalf; Kosha Ruparel; J Eric Schmitt; Elaine H Zackai; Courtney A Durdle; Naomi J Goodrich-Hunsaker; Tony J Simon; Anne S Bassett; Nancy J Butcher; Eva W C Chow; Fidel Vila-Rodriguez; Adam Cunningham; Joanne Doherty; David E Linden; Hayley Moss; Michael J Owen; Marianne van den Bree; Nicolas A Crossley; Gabriela M Repetto; Paul M Thompson; Carrie E Bearden
Journal:  Am J Psychiatry       Date:  2020-02-12       Impact factor: 18.112

  8 in total

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