Literature DB >> 19887309

Building 3-D statistical shape models by direct optimization.

Rhodri H Davies1, Carole J Twining, Timothy F Cootes, Chris J Taylor.   

Abstract

Statistical shape models are powerful tools for image interpretation and shape analysis. A simple, yet effective, way of building such models is to capture the statistics of sampled point coordinates over a training set of example shapes. However, a major drawback of this approach is the need to establish a correspondence across the training set. In 2-D, a correspondence is often defined using a set of manually placed 'landmarks' and linear interpolation to sample the shape in between. Such annotation is, however, time-consuming and subjective, particularly when extended to 3-D. In this paper, we show that it is possible to establish a dense correspondence across the whole training set automatically by treating correspondence as an optimization problem. The objective function we use for the optimization is based on the minimum description length principle, which we argue is a criterion that leads to models with good compactness, specificity, and generalization ability. We manipulate correspondence by reparameterizing each training shape. We describe an explicit representation of reparameterization for surfaces in 3-D that makes it impossible to generate an illegal (i.e., not one-to-one) correspondence. We also describe several large-scale optimization strategies for model building, and perform a detailed analysis of each approach. Finally, we derive quantitative measures of model quality, allowing meaningful comparison between models built using different methods. Results are given for several different training sets of 3-D shapes, which show that the minimum description length models perform significantly better than other approaches.

Mesh:

Year:  2009        PMID: 19887309     DOI: 10.1109/TMI.2009.2035048

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  12 in total

1.  Analysis of pediatric airway morphology using statistical shape modeling.

Authors:  Stephen M Humphries; Kendall S Hunter; Robin Shandas; Robin R Deterding; Emily M DeBoer
Journal:  Med Biol Eng Comput       Date:  2015-12-31       Impact factor: 2.602

2.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

3.  Group-wise cortical correspondence via sulcal curve-constrained entropy minimization.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Inf Process Med Imaging       Date:  2013

4.  Skeletal Shape Correspondence Through Entropy.

Authors:  Liyun Tu; Martin Styner; Jared Vicory; Shireen Elhabian; Rui Wang; Junpyo Hong; Beatriz Paniagua; Juan C Prieto; Dan Yang; Ross Whitaker; Stephen M Pizer
Journal:  IEEE Trans Med Imaging       Date:  2017-09-21       Impact factor: 10.048

5.  Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space.

Authors:  Jin Kyu Gahm; Yonggang Shi
Journal:  Med Image Anal       Date:  2018-03-16       Impact factor: 8.545

6.  Fitting Skeletal Object Models Using Spherical Harmonics Based Template Warping.

Authors:  Liyun Tu; Dan Yang; Jared Vicory; Xiaohong Zhang; Stephen M Pizer; Martin Styner
Journal:  IEEE Signal Process Lett       Date:  2015-09-03       Impact factor: 3.109

7.  Regional manifold learning for disease classification.

Authors:  Dong Hye Ye; Benoit Desjardins; Jihun Hamm; Harold Litt; Kilian M Pohl
Journal:  IEEE Trans Med Imaging       Date:  2014-06       Impact factor: 10.048

8.  3D segmentation of maxilla in cone-beam computed tomography imaging using base invariant wavelet active shape model on customized two-manifold topology.

Authors:  Yu-Bing Chang; James J Xia; Peng Yuan; Tai-Hong Kuo; Zixiang Xiong; Jaime Gateno; Xiaobo Zhou
Journal:  J Xray Sci Technol       Date:  2013       Impact factor: 1.535

9.  Particle system based adaptive sampling on spherical parameter space to improve the MDL method for construction of statistical shape models.

Authors:  Rui Xu; Xiangrong Zhou; Yasushi Hirano; Rie Tachibana; Takeshi Hara; Shoji Kido; Hiroshi Fujita
Journal:  Comput Math Methods Med       Date:  2013-06-05       Impact factor: 2.238

10.  Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies.

Authors:  Ilwoo Lyu; Sun H Kim; Joon-Kyung Seong; Sang W Yoo; Alan Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Front Neurosci       Date:  2015-06-11       Impact factor: 4.677

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