Literature DB >> 24683983

Group-wise cortical correspondence via sulcal curve-constrained entropy minimization.

Ilwoo Lyu, Sun Hyung Kim, Joon-Kyung Seong, Sang Wook Yoo, Alan C Evans, Yundi Shi, Mar Sanchez, Marc Niethammer, Martin A Styner.   

Abstract

We present a novel cortical correspondence method employing group-wise registration in a spherical parametrization space for the use in local cortical thickness analysis in human and non-human primate neuroimaging studies. The proposed method is unbiased registration that estimates a continuous smooth deformation field into an unbiased average space via sulcal curve-constrained entropy minimization using spherical harmonic decomposition of the spherical deformation field. We initialize a correspondence by our pair-wise method that establishes a surface correspondence with a prior template. Since this pair-wise correspondence is biased to the choice of a template, we further improve the correspondence by employing unbiased ensemble entropy minimization across all surfaces, which yields a deformation field onto the iteratively updated unbiased average. The specific entropy metric incorporates two terms: the first focused on optimizing the correspondence of automatically extracted sulcal landmarks and the second on that of sulcal depth maps. We also propose an encoding scheme for spherical deformation via spherical harmonics as well as a novel method to choose an optimal spherical polar coordinate system for the most efficient deformation field estimation. The experimental results show evidence that the proposed method improves the correspondence quality in non-human primate and human subjects as compared to the pair-wise method.

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Year:  2013        PMID: 24683983      PMCID: PMC4003502          DOI: 10.1007/978-3-642-38868-2_31

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  13 in total

1.  Cortical surface registration using spherical thin-plate spline with sulcal lines and mean curvature as features.

Authors:  Hyunjin Park; Jun-Sung Park; Joon-Kyung Seong; Duk L Na; Jong-Min Lee
Journal:  J Neurosci Methods       Date:  2012-02-16       Impact factor: 2.390

2.  Spectral-based automatic labeling and refining of human cortical sulcal curves using expert-provided examples.

Authors:  Ilwoo Lyu; Joon-Kyung Seong; Sung Yong Shin; Kiho Im; Jee Hoon Roh; Min-Jeong Kim; Geon Ha Kim; Jong Hun Kim; Alan C Evans; Duk L Na; Jong-Min Lee
Journal:  Neuroimage       Date:  2010-04-02       Impact factor: 6.556

3.  Automated 3-D extraction and evaluation of the inner and outer cortical surfaces using a Laplacian map and partial volume effect classification.

Authors:  June Sic Kim; Vivek Singh; Jun Ki Lee; Jason Lerch; Yasser Ad-Dab'bagh; David MacDonald; Jong Min Lee; Sun I Kim; Alan C Evans
Journal:  Neuroimage       Date:  2005-08-01       Impact factor: 6.556

Review 4.  Surface-based approaches to spatial localization and registration in primate cerebral cortex.

Authors:  David C Van Essen
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

5.  An unbiased iterative group registration template for cortical surface analysis.

Authors:  Oliver Lyttelton; Maxime Boucher; Steven Robbins; Alan Evans
Journal:  Neuroimage       Date:  2006-12-26       Impact factor: 6.556

6.  Whole brain diffeomorphic metric mapping via integration of sulcal and gyral curves, cortical surfaces, and images.

Authors:  Jia Du; Laurent Younes; Anqi Qiu
Journal:  Neuroimage       Date:  2011-01-31       Impact factor: 6.556

7.  Shape modeling and analysis with entropy-based particle systems.

Authors:  Joshua Cates; P Thomas Fletcher; Martin Styner; Martha Shenton; Ross Whitaker
Journal:  Inf Process Med Imaging       Date:  2007

8.  Cortical correspondence with probabilistic fiber connectivity.

Authors:  Ipek Oguz; Marc Niethammer; Josh Cates; Ross Whitaker; Thomas Fletcher; Clement Vachet; Martin Styner
Journal:  Inf Process Med Imaging       Date:  2009

9.  Building 3-D statistical shape models by direct optimization.

Authors:  Rhodri H Davies; Carole J Twining; Timothy F Cootes; Chris J Taylor
Journal:  IEEE Trans Med Imaging       Date:  2009-11-03       Impact factor: 10.048

10.  Cortical Correspondence via Sulcal Curve-Constrained Spherical Registration with Application to Macaque Studies.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-13
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  7 in total

1.  Constructing Statistically Unbiased Cortical Surface Templates Using Feature-Space Covariance.

Authors:  Prasanna Parvathaneni; Ilwoo Lyu; Yuankai Huo; Justin Blaber; Allison E Hainline; Hakmook Kang; Neil D Woodward; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

2.  SVA: Shape variation analyzer.

Authors:  Priscille de Dumast; Clement Mirabel; Beatriz Paniagua; Marilia Yatabe; Antonio Ruellas; Nina Tubau; Martin Styner; Lucia Cevidanes; Juan C Prieto
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-12

3.  Validation of Group-wise Registration for Surface-based Functional MRI Analysis.

Authors:  Chang Yu; Yue Liu; Leon Y Cai; Cailey I Kerley; Kaiwen Xu; Warren D Taylor; Hakmook Kang; Andrea T Shafer; Lori L Beason-Held; Susan M Resnick; Bennett A Landman; Ilwoo Lyu
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

4.  A web-based system for neural network based classification in temporomandibular joint osteoarthritis.

Authors:  Priscille de Dumast; Clément Mirabel; Lucia Cevidanes; Antonio Ruellas; Marilia Yatabe; Marcos Ioshida; Nina Tubau Ribera; Loic Michoud; Liliane Gomes; Chao Huang; Hongtu Zhu; Luciana Muniz; Brandon Shoukri; Beatriz Paniagua; Martin Styner; Steve Pieper; Francois Budin; Jean-Baptiste Vimort; Laura Pascal; Juan Carlos Prieto
Journal:  Comput Med Imaging Graph       Date:  2018-05-01       Impact factor: 4.790

Review 5.  Entropy-based particle correspondence for shape populations.

Authors:  Ipek Oguz; Josh Cates; Manasi Datar; Beatriz Paniagua; Thomas Fletcher; Clement Vachet; Martin Styner; Ross Whitaker
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-12-08       Impact factor: 2.924

6.  A cortical shape-adaptive approach to local gyrification index.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Jessica B Girault; John H Gilmore; Martin A Styner
Journal:  Med Image Anal       Date:  2018-06-28       Impact factor: 8.545

7.  Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies.

Authors:  Ilwoo Lyu; Sun H Kim; Joon-Kyung Seong; Sang W Yoo; Alan Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Front Neurosci       Date:  2015-06-11       Impact factor: 4.677

  7 in total

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