Literature DB >> 20363334

Spectral-based automatic labeling and refining of human cortical sulcal curves using expert-provided examples.

Ilwoo Lyu1, Joon-Kyung Seong, Sung Yong Shin, Kiho Im, Jee Hoon Roh, Min-Jeong Kim, Geon Ha Kim, Jong Hun Kim, Alan C Evans, Duk L Na, Jong-Min Lee.   

Abstract

We present a spectral-based method for automatically labeling and refining major sulcal curves of a human cerebral cortex. Given a set of input (unlabeled) sulcal curves automatically extracted from a cortical surface and a collection of expert-provided examples (labeled sulcal curves), our objective is to identify the input major sulcal curves and assign their neuroanatomical labels, and then refines these curves based on the expert-provided example data, without employing any atlas-based registration scheme as preprocessing. In order to construct the example data, neuroanatomists manually labeled a set of 24 major sulcal curves (12 each for the left and right hemispheres) for each individual subject according to a precise protocol. We collected 30 sets of such curves from 30 subjects. Given the raw input sulcal curve set of a subject, we choose the most similar example curve to each input curve in the set to label and refine the latter according to the former. We adapt a spectral matching algorithm to choose the example curve by exploiting the sulcal curve features and their relationship. The high dimensionality of sulcal curve data in spectral matching is addressed by using their multi-resolution representations, which greatly reduces time and space complexities. Our method provides consistent labeling and refining results even under high variability of cortical sulci across the subjects. Through experiments we show that the results are comparable in accuracy to those done manually. Most output curves exhibited accuracy values higher than 80%, and the mean accuracy values of the curves in the left and the right hemispheres were 84.69% and 84.58%, respectively. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20363334     DOI: 10.1016/j.neuroimage.2010.03.076

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  14 in total

1.  Group-wise cortical correspondence via sulcal curve-constrained entropy minimization.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Inf Process Med Imaging       Date:  2013

2.  Sulcal Depth-based Cortical Shape Analysis in Normal Healthy Control and Schizophrenia Groups.

Authors:  Ilwoo Lyu; Hakmook Kang; Neil D Woodward; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

3.  Constructing Statistically Unbiased Cortical Surface Templates Using Feature-Space Covariance.

Authors:  Prasanna Parvathaneni; Ilwoo Lyu; Yuankai Huo; Justin Blaber; Allison E Hainline; Hakmook Kang; Neil D Woodward; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

4.  Gyral net: A new representation of cortical folding organization.

Authors:  Hanbo Chen; Yujie Li; Fangfei Ge; Gang Li; Dinggang Shen; Tianming Liu
Journal:  Med Image Anal       Date:  2017-07-15       Impact factor: 8.545

5.  Quantification and discrimination of abnormal sulcal patterns in polymicrogyria.

Authors:  Kiho Im; Rudolph Pienaar; Michael J Paldino; Nadine Gaab; Albert M Galaburda; P Ellen Grant
Journal:  Cereb Cortex       Date:  2012-09-17       Impact factor: 5.357

6.  Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction.

Authors:  Zhen Yang; Aaron Carass; Chen Chen; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-02-23

7.  Automatic Sulcal Curve Extraction with MRF Based Shape Prior.

Authors:  Zhen Yang; Aaron Carass; Jerry L Prince
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012-05

8.  Cortical Correspondence via Sulcal Curve-Constrained Spherical Registration with Application to Macaque Studies.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-13

9.  Hierarchical spherical deformation for cortical surface registration.

Authors:  Ilwoo Lyu; Hakmook Kang; Neil D Woodward; Martin A Styner; Bennett A Landman
Journal:  Med Image Anal       Date:  2019-06-29       Impact factor: 8.545

Review 10.  Sulcal pits and patterns in developing human brains.

Authors:  Kiho Im; P Ellen Grant
Journal:  Neuroimage       Date:  2018-03-27       Impact factor: 6.556

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