Literature DB >> 29887664

Constructing Statistically Unbiased Cortical Surface Templates Using Feature-Space Covariance.

Prasanna Parvathaneni1, Ilwoo Lyu2, Yuankai Huo1, Justin Blaber1, Allison E Hainline3, Hakmook Kang3,4, Neil D Woodward5, Bennett A Landman1,2,6,5,4.   

Abstract

The choice of surface template plays an important role in cross-sectional subject analyses involving cortical brain surfaces because there is a tendency toward registration bias given variations in inter-individual and inter-group sulcal and gyral patterns. In order to account for the bias and spatial smoothing, we propose a feature-based unbiased average template surface. In contrast to prior approaches, we factor in the sample population covariance and assign weights based on feature information to minimize the influence of covariance in the sampled population. The mean surface is computed by applying the weights obtained from an inverse covariance matrix, which guarantees that multiple representations from similar groups (e.g., involving imaging, demographic, diagnosis information) are down-weighted to yield an unbiased mean in feature space. Results are validated by applying this approach in two different applications. For evaluation, the proposed unbiased weighted surface mean is compared with un-weighted means both qualitatively and quantitatively (mean squared error and absolute relative distance of both the means with baseline). In first application, we validated the stability of the proposed optimal mean on a scan-rescan reproducibility dataset by incrementally adding duplicate subjects. In the second application, we used clinical research data to evaluate the difference between the weighted and unweighted mean when different number of subjects were included in control versus schizophrenia groups. In both cases, the proposed method achieved greater stability that indicated reduced impacts of sampling bias. The weighted mean is built based on covariance information in feature space as opposed to spatial location, thus making this a generic approach to be applicable to any feature of interest.

Entities:  

Keywords:  Gray matter cortical surface; cortical surface feature space; unbiased template

Year:  2018        PMID: 29887664      PMCID: PMC5992907          DOI: 10.1117/12.2293641

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  20 in total

Review 1.  SUMA.

Authors:  Ziad S Saad; Richard C Reynolds
Journal:  Neuroimage       Date:  2011-09-17       Impact factor: 6.556

2.  Spectral-based automatic labeling and refining of human cortical sulcal curves using expert-provided examples.

Authors:  Ilwoo Lyu; Joon-Kyung Seong; Sung Yong Shin; Kiho Im; Jee Hoon Roh; Min-Jeong Kim; Geon Ha Kim; Jong Hun Kim; Alan C Evans; Duk L Na; Jong-Min Lee
Journal:  Neuroimage       Date:  2010-04-02       Impact factor: 6.556

3.  Automated 3-D extraction and evaluation of the inner and outer cortical surfaces using a Laplacian map and partial volume effect classification.

Authors:  June Sic Kim; Vivek Singh; Jun Ki Lee; Jason Lerch; Yasser Ad-Dab'bagh; David MacDonald; Jong Min Lee; Sun I Kim; Alan C Evans
Journal:  Neuroimage       Date:  2005-08-01       Impact factor: 6.556

Review 4.  Surface-based approaches to spatial localization and registration in primate cerebral cortex.

Authors:  David C Van Essen
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

5.  Analysis of functional image analysis contest (FIAC) data with brainvoyager QX: From single-subject to cortically aligned group general linear model analysis and self-organizing group independent component analysis.

Authors:  Rainer Goebel; Fabrizio Esposito; Elia Formisano
Journal:  Hum Brain Mapp       Date:  2006-05       Impact factor: 5.038

6.  Multiple cortical surface correspondence using pairwise shape similarity.

Authors:  Pahal Dalal; Feng Shi; Dinggang Shen; Song Wang
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

7.  Multi-parametric neuroimaging reproducibility: a 3-T resource study.

Authors:  Bennett A Landman; Alan J Huang; Aliya Gifford; Deepti S Vikram; Issel Anne L Lim; Jonathan A D Farrell; John A Bogovic; Jun Hua; Min Chen; Samson Jarso; Seth A Smith; Suresh Joel; Susumu Mori; James J Pekar; Peter B Barker; Jerry L Prince; Peter C M van Zijl
Journal:  Neuroimage       Date:  2010-11-20       Impact factor: 6.556

8.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

9.  N4ITK: improved N3 bias correction.

Authors:  Nicholas J Tustison; Brian B Avants; Philip A Cook; Yuanjie Zheng; Alexander Egan; Paul A Yushkevich; James C Gee
Journal:  IEEE Trans Med Imaging       Date:  2010-04-08       Impact factor: 10.048

Review 10.  Mapping cortical change in Alzheimer's disease, brain development, and schizophrenia.

Authors:  Paul M Thompson; Kiralee M Hayashi; Elizabeth R Sowell; Nitin Gogtay; Jay N Giedd; Judith L Rapoport; Greig I de Zubicaray; Andrew L Janke; Stephen E Rose; James Semple; David M Doddrell; Yalin Wang; Theo G M van Erp; Tyrone D Cannon; Arthur W Toga
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

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