Literature DB >> 19694301

Cortical correspondence with probabilistic fiber connectivity.

Ipek Oguz1, Marc Niethammer, Josh Cates, Ross Whitaker, Thomas Fletcher, Clement Vachet, Martin Styner.   

Abstract

This paper presents a novel method of optimizing point-based correspondence among populations of human cortical surfaces by combining structural cues with probabilistic connectivity maps. The proposed method establishes a tradeoff between an even sampling of the cortical surfaces (a low surface entropy) and the similarity of corresponding points across the population (a low ensemble entropy). The similarity metric, however, isn't constrained to be just spatial proximity, but uses local sulcal depth measurements as well as probabilistic connectivity maps, computed from DWI scans via a stochastic tractography algorithm, to enhance the correspondence definition. We propose a novel method for projecting this fiber connectivity information on the cortical surface, using a surface evolution technique. Our cortical correspondence method does not require a spherical parameterization. Experimental results are presented, showing improved correspondence quality demonstrated by a cortical thickness analysis, as compared to correspondence methods using spatial metrics as the sole correspondence criterion.

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Mesh:

Year:  2009        PMID: 19694301      PMCID: PMC2751643          DOI: 10.1007/978-3-642-02498-6_54

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  13 in total

1.  High-resolution intersubject averaging and a coordinate system for the cortical surface.

Authors:  B Fischl; M I Sereno; R B Tootell; A M Dale
Journal:  Hum Brain Mapp       Date:  1999       Impact factor: 5.038

2.  Automatic construction of eigenshape models by direct optimization.

Authors:  A C Kotcheff; C J Taylor
Journal:  Med Image Anal       Date:  1998-12       Impact factor: 8.545

3.  In vivo fiber tractography using DT-MRI data.

Authors:  P J Basser; S Pajevic; C Pierpaoli; J Duda; A Aldroubi
Journal:  Magn Reson Med       Date:  2000-10       Impact factor: 4.668

4.  A minimum description length approach to statistical shape modeling.

Authors:  Rhodri H Davies; Carole J Twining; Tim F Cootes; John C Waterton; Chris J Taylor
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

5.  Characterization and propagation of uncertainty in diffusion-weighted MR imaging.

Authors:  T E J Behrens; M W Woolrich; M Jenkinson; H Johansen-Berg; R G Nunes; S Clare; P M Matthews; J M Brady; S M Smith
Journal:  Magn Reson Med       Date:  2003-11       Impact factor: 4.668

6.  Evaluation of 3D correspondence methods for model building.

Authors:  Martin A Styner; Kumar T Rajamani; Lutz-Peter Nolte; Gabriel Zsemlye; Gábor Székely; Chris J Taylor; Rhodri H Davies
Journal:  Inf Process Med Imaging       Date:  2003-07

7.  Mapping techniques for aligning sulci across multiple brains.

Authors:  Duygu Tosun; Maryam E Rettmann; Jerry L Prince
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

8.  Confidence mapping in diffusion tensor magnetic resonance imaging tractography using a bootstrap approach.

Authors:  Derek K Jones; Carlo Pierpaoli
Journal:  Magn Reson Med       Date:  2005-05       Impact factor: 4.668

9.  Shape modeling and analysis with entropy-based particle systems.

Authors:  Joshua Cates; P Thomas Fletcher; Martin Styner; Martha Shenton; Ross Whitaker
Journal:  Inf Process Med Imaging       Date:  2007

10.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

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  14 in total

1.  Group-wise cortical correspondence via sulcal curve-constrained entropy minimization.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Inf Process Med Imaging       Date:  2013

2.  Combined SPHARM-PDM and entropy-based particle systems shape analysis framework.

Authors:  Beatriz Paniagua; Lucile Bompard; Josh Cates; Ross Whitaker; Manasi Datar; Clement Vachet; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-03-23

3.  Multiple cortical surface correspondence using pairwise shape similarity.

Authors:  Pahal Dalal; Feng Shi; Dinggang Shen; Song Wang
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

4.  Fusion of white and gray matter geometry: a framework for investigating brain development.

Authors:  Peter Savadjiev; Yogesh Rathi; Sylvain Bouix; Alex R Smith; Robert T Schultz; Ragini Verma; Carl-Fredrik Westin
Journal:  Med Image Anal       Date:  2014-07-08       Impact factor: 8.545

5.  Combining surface and fiber geometry: an integrated approach to brain morphology.

Authors:  Peter Savadjiev; Yogesh Rathi; Sylvain Bouix; Alex R Smith; Robert T Schultz; Ragini Verma; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

6.  Particle-guided image registration.

Authors:  Joohwi Lee; Ilwoo Lyu; Ipek Oğuz; Martin A Styner
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

7.  Hierarchical spherical deformation for cortical surface registration.

Authors:  Ilwoo Lyu; Hakmook Kang; Neil D Woodward; Martin A Styner; Bennett A Landman
Journal:  Med Image Anal       Date:  2019-06-29       Impact factor: 8.545

8.  Automatic cortical thickness analysis on rodent brain.

Authors:  Joohwi Lee; Cindy Ehlers; Fulton Crews; Marc Niethammer; Francois Budin; Beatriz Paniagua; Kathy Sulik; Josephine Johns; Martin Styner; Ipek Oguz
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2011-03-15

9.  Enhanced Cortical Thickness Measurements for Rodent Brains via Lagrangian-based RK4 Streamline Computation.

Authors:  Joohwi Lee; Sun Hyung Kim; Ipek Oguz; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

Review 10.  Entropy-based particle correspondence for shape populations.

Authors:  Ipek Oguz; Josh Cates; Manasi Datar; Beatriz Paniagua; Thomas Fletcher; Clement Vachet; Martin Styner; Ross Whitaker
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-12-08       Impact factor: 2.924

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