Literature DB >> 26646417

Entropy-based particle correspondence for shape populations.

Ipek Oguz1, Josh Cates2, Manasi Datar2, Beatriz Paniagua3, Thomas Fletcher2, Clement Vachet2, Martin Styner3, Ross Whitaker2.   

Abstract

PURPOSE: Statistical shape analysis of anatomical structures plays an important role in many medical image analysis applications such as understanding the structural changes in anatomy in various stages of growth or disease. Establishing accurate correspondence across object populations is essential for such statistical shape analysis studies.
METHODS: In this paper, we present an entropy-based correspondence framework for computing point-based correspondence among populations of surfaces in a groupwise manner. This robust framework is parameterization-free and computationally efficient. We review the core principles of this method as well as various extensions to deal effectively with surfaces of complex geometry and application-driven correspondence metrics.
RESULTS: We apply our method to synthetic and biological datasets to illustrate the concepts proposed and compare the performance of our framework to existing techniques.
CONCLUSIONS: Through the numerous extensions and variations presented here, we create a very flexible framework that can effectively handle objects of various topologies, multi-object complexes, open surfaces, and objects of complex geometry such as high-curvature regions or extremely thin features.

Entities:  

Keywords:  Correspondence; Entropy; Shape analysis

Mesh:

Year:  2015        PMID: 26646417      PMCID: PMC4899300          DOI: 10.1007/s11548-015-1319-6

Source DB:  PubMed          Journal:  Int J Comput Assist Radiol Surg        ISSN: 1861-6410            Impact factor:   2.924


  23 in total

1.  Evaluation of 3D correspondence methods for model building.

Authors:  Martin A Styner; Kumar T Rajamani; Lutz-Peter Nolte; Gabriel Zsemlye; Gábor Székely; Chris J Taylor; Rhodri H Davies
Journal:  Inf Process Med Imaging       Date:  2003-07

2.  Minimum Description Length shape and appearance models.

Authors:  Hans Henrik Thodberg
Journal:  Inf Process Med Imaging       Date:  2003-07

3.  Analysis of functional image analysis contest (FIAC) data with brainvoyager QX: From single-subject to cortically aligned group general linear model analysis and self-organizing group independent component analysis.

Authors:  Rainer Goebel; Fabrizio Esposito; Elia Formisano
Journal:  Hum Brain Mapp       Date:  2006-05       Impact factor: 5.038

4.  3D active shape models using gradient descent optimization of description length.

Authors:  Tobias Heimann; Ivo Wolf; Tomos Williams; Hans-Peter Meinzer
Journal:  Inf Process Med Imaging       Date:  2005

5.  Non-parametric surface-based regularisation for building statistical shape models.

Authors:  Carole Twining; Rhodri Davies; Chris Taylor
Journal:  Inf Process Med Imaging       Date:  2007

6.  Automatic generation of 3D statistical shape models with optimal landmark distributions.

Authors:  T Heimann; I Wolf; H-P Meinzer
Journal:  Methods Inf Med       Date:  2007       Impact factor: 2.176

7.  Particle-based shape analysis of multi-object complexes.

Authors:  Joshua Cates; P Thomas Fletcher; Martin Styner; Heather Cody Hazlett; Ross Whitaker
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

8.  Cortical correspondence with probabilistic fiber connectivity.

Authors:  Ipek Oguz; Marc Niethammer; Josh Cates; Ross Whitaker; Thomas Fletcher; Clement Vachet; Martin Styner
Journal:  Inf Process Med Imaging       Date:  2009

9.  Particle based shape regression of open surfaces with applications to developmental neuroimaging.

Authors:  Manasi Datar; Joshua Cates; P Thomas Fletcher; Sylvain Gouttard; Guido Gerig; Ross Whitaker
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

10.  Geometric correspondence for ensembles of nonregular shapes.

Authors:  Manasi Datar; Yaniv Gur; Beatriz Paniagua; Martin Styner; Ross Whitaker
Journal:  Med Image Comput Comput Assist Interv       Date:  2011
View more
  7 in total

1.  Genetic mapping of molar size relations identifies inhibitory locus for third molars in mice.

Authors:  Nicolas Navarro; A Murat Maga
Journal:  Heredity (Edinb)       Date:  2018-01-05       Impact factor: 3.821

2.  Surface-Based Spatial Pyramid Matching of Cortical Regions for Analysis of Cognitive Performance.

Authors:  Kristen M Campbell; Jeffrey S Anderson; P Thomas Fletcher
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

3.  Benchmarking off-the-shelf statistical shape modeling tools in clinical applications.

Authors:  Anupama Goparaju; Krithika Iyer; Alexandre Bône; Nan Hu; Heath B Henninger; Andrew E Anderson; Stanley Durrleman; Matthijs Jacxsens; Alan Morris; Ibolya Csecs; Nassir Marrouche; Shireen Y Elhabian
Journal:  Med Image Anal       Date:  2021-10-26       Impact factor: 8.545

4.  Establishing Surface Correspondence for Post-surgical Cortical Thickness Changes in Temporal Lobe Epilepsy.

Authors:  Yue Liu; Dario J Englot; Victoria L Morgan; Warren D Taylor; Ying Wei; Ipek Oguz; Bennett A Landman; Ilwoo Lyu
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2021-02-15

5.  Hierarchical Vertex Regression-Based Segmentation of Head and Neck CT Images for Radiotherapy Planning.

Authors: 
Journal:  IEEE Trans Image Process       Date:  2018-02       Impact factor: 10.856

6.  Comparative analysis of squamate brains unveils multi-level variation in cerebellar architecture associated with locomotor specialization.

Authors:  Simone Macrì; Yoland Savriama; Imran Khan; Nicolas Di-Poï
Journal:  Nat Commun       Date:  2019-12-05       Impact factor: 14.919

7.  Automatic construction of statistical shape models using deformable simplex meshes with vector field convolution energy.

Authors:  Jinke Wang; Changfa Shi
Journal:  Biomed Eng Online       Date:  2017-04-24       Impact factor: 2.819

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.