Literature DB >> 17633711

Shape modeling and analysis with entropy-based particle systems.

Joshua Cates1, P Thomas Fletcher, Martin Styner, Martha Shenton, Ross Whitaker.   

Abstract

This paper presents a new method for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on any specific surface parameterization. The method requires very little preprocessing or parameter tuning, and is applicable to a wider range of problems than existing methods, including nonmanifold surfaces and objects of arbitrary topology. The proposed method is to construct a point-based sampling of the shape ensemble that simultaneously maximizes both the geometric accuracy and the statistical simplicity of the model. Surface point samples, which also define the shape-to-shape correspondences, are modeled as sets of dynamic particles that are constrained to lie on a set of implicit surfaces. Sample positions are optimized by gradient descent on an energy function that balances the negative entropy of the distribution on each shape with the positive entropy of the ensemble of shapes. We also extend the method with a curvature-adaptive sampling strategy in order to better approximate the geometry of the objects. This paper presents the formulation; several synthetic examples in two and three dimensions; and an application to the statistical shape analysis of the caudate and hippocampus brain structures from two clinical studies.

Mesh:

Year:  2007        PMID: 17633711      PMCID: PMC2768473          DOI: 10.1007/978-3-540-73273-0_28

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  9 in total

1.  An algorithmic overview of surface registration techniques for medical imaging.

Authors:  M A Audette; F P Ferrie; T M Peters
Journal:  Med Image Anal       Date:  2000-09       Impact factor: 8.545

2.  Automatic construction of eigenshape models by direct optimization.

Authors:  A C Kotcheff; C J Taylor
Journal:  Med Image Anal       Date:  1998-12       Impact factor: 8.545

3.  A minimum description length approach to statistical shape modeling.

Authors:  Rhodri H Davies; Carole J Twining; Tim F Cootes; John C Waterton; Chris J Taylor
Journal:  IEEE Trans Med Imaging       Date:  2002-05       Impact factor: 10.048

4.  Minimum Description Length shape and appearance models.

Authors:  Hans Henrik Thodberg
Journal:  Inf Process Med Imaging       Date:  2003-07

5.  Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM.

Authors:  Martin Styner; Ipek Oguz; Shun Xu; Christian Brechbühler; Dimitrios Pantazis; James J Levitt; Martha E Shenton; Guido Gerig
Journal:  Insight J       Date:  2006

6.  Particle systems for efficient and accurate high-order finite element visualization.

Authors:  Miriah Meyer; Blake Nelson; Robert Kirby; Ross Whitaker
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Sep-Oct       Impact factor: 4.579

7.  STATISTICAL SHAPE ANALYSIS OF BRAIN STRUCTURES USING SPHERICAL WAVELETS.

Authors:  D Nain; M Styner; M Niethammer; J J Levitt; M E Shenton; G Gerig; A Bobick; A Tannenbaum
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2007-04-01

8.  Shape of caudate nucleus and its cognitive correlates in neuroleptic-naive schizotypal personality disorder.

Authors:  James J Levitt; Carl Fredrik Westin; Paul G Nestor; Raul S J Estepar; Chandlee C Dickey; Martina M Voglmaier; Larry J Seidman; Ron Kikinis; Ferenc A Jolesz; Robert W McCarley; Martha E Shenton
Journal:  Biol Psychiatry       Date:  2004-01-15       Impact factor: 13.382

9.  Boundary and medial shape analysis of the hippocampus in schizophrenia.

Authors:  Martin Styner; Jeffrey A Lieberman; Dimitrios Pantazis; Guido Gerig
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

  9 in total
  49 in total

1.  Landmark-free geometric methods in biological shape analysis.

Authors:  Patrice Koehl; Joel Hass
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

2.  Metric optimization for surface analysis in the Laplace-Beltrami embedding space.

Authors:  Yonggang Shi; Rongjie Lai; Danny J J Wang; Daniel Pelletier; David Mohr; Nancy Sicotte; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2014-03-25       Impact factor: 10.048

3.  Group-wise cortical correspondence via sulcal curve-constrained entropy minimization.

Authors:  Ilwoo Lyu; Sun Hyung Kim; Joon-Kyung Seong; Sang Wook Yoo; Alan C Evans; Yundi Shi; Mar Sanchez; Marc Niethammer; Martin A Styner
Journal:  Inf Process Med Imaging       Date:  2013

4.  Particle-based shape analysis of multi-object complexes.

Authors:  Joshua Cates; P Thomas Fletcher; Martin Styner; Heather Cody Hazlett; Ross Whitaker
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

5.  Cortical correspondence with probabilistic fiber connectivity.

Authors:  Ipek Oguz; Marc Niethammer; Josh Cates; Ross Whitaker; Thomas Fletcher; Clement Vachet; Martin Styner
Journal:  Inf Process Med Imaging       Date:  2009

6.  Skeletal shape correspondence via entropy minimization.

Authors:  Liyun Tu; Martin Styner; Jared Vicory; Beatriz Paniagua; Juan Carlos Prieto; Dan Yang; Stephen M Pizer
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015

7.  Medial axis segmentation of cranial nerves using shape statistics-aware discrete deformable models.

Authors:  Sharmin Sultana; Praful Agrawal; Shireen Elhabian; Ross Whitaker; Jason E Blatt; Benjamin Gilles; Justin Cetas; Tanweer Rashid; Michel A Audette
Journal:  Int J Comput Assist Radiol Surg       Date:  2019-06-24       Impact factor: 2.924

8.  Hierarchical Vertex Regression-Based Segmentation of Head and Neck CT Images for Radiotherapy Planning.

Authors: 
Journal:  IEEE Trans Image Process       Date:  2018-02       Impact factor: 10.856

9.  Sampling and visualizing creases with scale-space particles.

Authors:  Gordon L Kindlmann; Raúl San José Estépar; Stephen M Smith; Carl-Fredrik Westin
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

10.  Geodesic distances to landmarks for dense correspondence on ensembles of complex shapes.

Authors:  Manasi Datar; Ilwoo Lyu; SunHyung Kim; Joshua Cates; Martin A Styner; Ross Whitaker
Journal:  Med Image Comput Comput Assist Interv       Date:  2013
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