Literature DB >> 24481708

Spectroscopic and computational study of a nonheme iron nitrosyl center in a biosynthetic model of nitric oxide reductase.

Saumen Chakraborty1, Julian Reed, Matthew Ross, Mark J Nilges, Igor D Petrik, Soumya Ghosh, Sharon Hammes-Schiffer, J Timothy Sage, Yong Zhang, Charles E Schulz, Yi Lu.   

Abstract

A major barrier to understanding the mechanism of nitric oxide reductases (NORs) is the lack of a selective probe of NO binding to the nonheme FeB center. By replacing the heme in a biosynthetic model of NORs, which structurally and functionally mimics NORs, with isostructural ZnPP, the electronic structure and functional properties of the FeB nitrosyl complex was probed. This approach allowed observation of the first S=3/2 nonheme {FeNO}(7) complex in a protein-based model system of NOR. Detailed spectroscopic and computational studies show that the electronic state of the {FeNO}(7) complex is best described as a high spin ferrous iron (S=2) antiferromagnetically coupled to an NO radical (S=1/2) [Fe(2+)-NO(.)]. The radical nature of the FeB -bound NO would facilitate N-N bond formation by radical coupling with the heme-bound NO. This finding, therefore, supports the proposed trans mechanism of NO reduction by NORs.
Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  EPR spectroscopy; computational chemistry; heme proteins; iron; reaction mechanisms

Mesh:

Substances:

Year:  2014        PMID: 24481708      PMCID: PMC4048663          DOI: 10.1002/anie.201308431

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  36 in total

Review 1.  Nitric oxide in biological denitrification: Fe/Cu metalloenzyme and metal complex NO(x) redox chemistry.

Authors:  Ian M Wasser; Simon de Vries; Pierre Moënne-Loccoz; Imke Schröder; Kenneth D Karlin
Journal:  Chem Rev       Date:  2002-04       Impact factor: 60.622

Review 2.  Solid-state structures of metalloporphyrin NO(x )compounds.

Authors:  Graeme R A Wyllie; W Robert Scheidt
Journal:  Chem Rev       Date:  2002-04       Impact factor: 60.622

3.  Nitric oxide adducts of the binuclear iron site of hemerythrin: spectroscopy and reactivity.

Authors:  J M Nocek; D M Kurtz; J T Sage; Y M Xia; P Debrunner; A K Shiemke; J Sanders-Loehr; T M Loehr
Journal:  Biochemistry       Date:  1988-02-09       Impact factor: 3.162

4.  Spin density distribution in five- and six-coordinate iron(II)-porphyrin NO complexes evidenced by magnetic circular dichroism spectroscopy.

Authors:  V K K Praneeth; Frank Neese; Nicolai Lehnert
Journal:  Inorg Chem       Date:  2005-04-18       Impact factor: 5.165

5.  Role of heme types in heme-copper oxidases: effects of replacing a heme b with a heme o mimic in an engineered heme-copper center in myoglobin.

Authors:  Ningyan Wang; Xuan Zhao; Yi Lu
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

6.  Structural basis of biological N2O generation by bacterial nitric oxide reductase.

Authors:  Tomoya Hino; Yushi Matsumoto; Shingo Nagano; Hiroshi Sugimoto; Yoshihiro Fukumori; Takeshi Murata; So Iwata; Yoshitsugu Shiro
Journal:  Science       Date:  2010-11-25       Impact factor: 47.728

7.  FeNO structure in distal pocket mutants of myoglobin based on resonance Raman spectroscopy.

Authors:  Candace M Coyle; Kathleen M Vogel; Thomas S Rush; Pawel M Kozlowski; Robert Williams; Thomas G Spiro; Yi Dou; Masao Ikeda-Saito; John S Olson; Marek Z Zgierski
Journal:  Biochemistry       Date:  2003-05-06       Impact factor: 3.162

8.  A functional nitric oxide reductase model.

Authors:  James P Collman; Ying Yang; Abhishek Dey; Richard A Decréau; Somdatta Ghosh; Takehiro Ohta; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

9.  EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment.

Authors:  D M Arciero; J D Lipscomb; B H Huynh; T A Kent; E Münck
Journal:  J Biol Chem       Date:  1983-12-25       Impact factor: 5.157

10.  Thiolate ligation of the active site Fe2+ of isopenicillin N synthase derives from substrate rather than endogenous cysteine: spectroscopic studies of site-specific Cys----Ser mutated enzymes.

Authors:  A M Orville; V J Chen; A Kriauciunas; M R Harpel; B G Fox; E Münck; J D Lipscomb
Journal:  Biochemistry       Date:  1992-05-19       Impact factor: 3.162

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  15 in total

1.  Structural, Photophysical, and Photochemical Characterization of Zinc Protoporphyrin IX in a Dimeric Variant of an Iron Storage Protein: Insights into the Mechanism of Photosensitized H2 Generation.

Authors:  Brenda S Benavides; Rajendra Acharya; Emily R Clark; Priyanka Basak; Michael J Maroney; Judith M Nocek; Kirk S Schanze; Donald M Kurtz
Journal:  J Phys Chem B       Date:  2019-07-24       Impact factor: 2.991

2.  Design of Heteronuclear Metalloenzymes.

Authors:  A Bhagi-Damodaran; P Hosseinzadeh; E Mirts; J Reed; I D Petrik; Y Lu
Journal:  Methods Enzymol       Date:  2016-07-26       Impact factor: 1.600

3.  Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

Authors:  Ambika Bhagi-Damodaran; Julian H Reed; Qianhong Zhu; Yelu Shi; Parisa Hosseinzadeh; Braddock A Sandoval; Kevin A Harnden; Shuyan Wang; Madeline R Sponholtz; Evan N Mirts; Sudharsan Dwaraknath; Yong Zhang; Pierre Moënne-Loccoz; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-25       Impact factor: 11.205

4.  Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases.

Authors:  Ambika Bhagi-Damodaran; Matthew A Michael; Qianhong Zhu; Julian Reed; Braddock A Sandoval; Evan N Mirts; Saumen Chakraborty; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  Nat Chem       Date:  2016-11-07       Impact factor: 24.427

5.  Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors.

Authors:  Evan N Mirts; Ambika Bhagi-Damodaran; Yi Lu
Journal:  Acc Chem Res       Date:  2019-03-26       Impact factor: 22.384

6.  Structure of a Zinc Porphyrin-Substituted Bacterioferritin and Photophysical Properties of Iron Reduction.

Authors:  Brenda S Benavides; Silvano Valandro; Daniela Cioloboc; Alexander B Taylor; Kirk S Schanze; Donald M Kurtz
Journal:  Biochemistry       Date:  2020-04-16       Impact factor: 3.162

Review 7.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

8.  Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism.

Authors:  Julian H Reed; Yelu Shi; Qianhong Zhu; Saumen Chakraborty; Evan N Mirts; Igor D Petrik; Ambika Bhagi-Damodaran; Matthew Ross; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

9.  Copper(I) Complex Mediated Nitric Oxide Reductive Coupling: Ligand Hydrogen Bonding Derived Proton Transfer Promotes N2O(g) Release.

Authors:  Gayan B Wijeratne; Mayukh Bhadra; Maxime A Siegler; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2019-10-29       Impact factor: 15.419

10.  HNO to NO Conversion Mechanism with Copper Zinc Superoxide Dismutase, Comparison with Heme Protein Mediated Conversions, and the Origin of Questionable Reversibility.

Authors:  Yelu Shi; Matthew A Michael; Yong Zhang
Journal:  Chemistry       Date:  2021-02-16       Impact factor: 5.236

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