Literature DB >> 33398888

HNO to NO Conversion Mechanism with Copper Zinc Superoxide Dismutase, Comparison with Heme Protein Mediated Conversions, and the Origin of Questionable Reversibility.

Yelu Shi1,2, Matthew A Michael1, Yong Zhang1.   

Abstract

The interconversion of NO and HNO, via copper zinc superoxide dismutase (CuZnSOD), is important in biomedicine and for HNO detection. Many mechanistic questions, including the decades-long debate on reversibility, were resolved in this work. Calculations of various active-site and full-protein models show that the basic mechanism is proton-coupled electron transfer with a computed barrier of 10.98 kcal mol-1 , which is in excellent agreement with experimental results (10.62 kcal mol-1 ), and this nonheme protein-mediated reaction has many significant mechanistic differences compared with the conversions mediated by heme proteins due to geometric and electronic factors. The reasons for the irreversible nature of this conversion and models with the first thermodynamically favorable and kinetically feasible mechanism for the experimental reverse reaction were discovered. Such results are the first for nonheme enzyme mediated HNO to NO conversions, which shall facilitate other related studies and HNO probe development.
© 2021 Wiley-VCH GmbH.

Entities:  

Keywords:  computational chemistry; copper; enzymes; nitrogen oxides; reaction mechanisms

Mesh:

Substances:

Year:  2021        PMID: 33398888      PMCID: PMC7954974          DOI: 10.1002/chem.202100015

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  74 in total

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Journal:  Free Radic Biol Med       Date:  2003-01-01       Impact factor: 7.376

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Journal:  J Med Chem       Date:  1990-12       Impact factor: 7.446

Review 3.  The nitrate-nitrite-nitric oxide pathway in physiology and therapeutics.

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Journal:  Nat Rev Drug Discov       Date:  2008-02       Impact factor: 84.694

4.  Direct detection of nitroxyl in aqueous solution using a tripodal copper(II) BODIPY complex.

Authors:  Joel Rosenthal; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

5.  Crystallographic structures of bovine copper-zinc superoxide dismutase reveal asymmetry in two subunits: functionally important three and five coordinate copper sites captured in the same crystal.

Authors:  M A Hough; S S Hasnain
Journal:  J Mol Biol       Date:  1999-04-02       Impact factor: 5.469

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Authors:  H H Schmidt; H Hofmann; U Schindler; Z S Shutenko; D D Cunningham; M Feelisch
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

Review 7.  Nitric oxide and the immune response.

Authors:  C Bogdan
Journal:  Nat Immunol       Date:  2001-10       Impact factor: 25.606

8.  Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases.

Authors:  Ambika Bhagi-Damodaran; Matthew A Michael; Qianhong Zhu; Julian Reed; Braddock A Sandoval; Evan N Mirts; Saumen Chakraborty; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  Nat Chem       Date:  2016-11-07       Impact factor: 24.427

9.  ONIOM study on a missing piece in our understanding of heme chemistry: bacterial tryptophan 2,3-dioxygenase with dual oxidants.

Authors:  Lung Wa Chung; Xin Li; Hiroshi Sugimoto; Yoshitsugu Shiro; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2010-09-01       Impact factor: 15.419

10.  Metabolic activation of cyanamide to an inhibitor of aldehyde dehydrogenase in vitro.

Authors:  E G Demaster; H T Nagasawa; F N Shirota
Journal:  Pharmacol Biochem Behav       Date:  1983       Impact factor: 3.533

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