Literature DB >> 29802230

Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

Ambika Bhagi-Damodaran1, Julian H Reed2, Qianhong Zhu3, Yelu Shi4, Parisa Hosseinzadeh2, Braddock A Sandoval1, Kevin A Harnden1, Shuyan Wang1, Madeline R Sponholtz2, Evan N Mirts5, Sudharsan Dwaraknath1, Yong Zhang6, Pierre Moënne-Loccoz7, Yi Lu8,2,5.   

Abstract

Despite high structural homology between NO reductases (NORs) and heme-copper oxidases (HCOs), factors governing their reaction specificity remain to be understood. Using a myoglobin-based model of NOR (FeBMb) and tuning its heme redox potentials (E°') to cover the native NOR range, through manipulating hydrogen bonding to the proximal histidine ligand and replacing heme b with monoformyl (MF-) or diformyl (DF-) hemes, we herein demonstrate that the E°' holds the key to reactivity differences between NOR and HCO. Detailed electrochemical, kinetic, and vibrational spectroscopic studies, in tandem with density functional theory calculations, demonstrate a strong influence of heme E°' on NO reduction. Decreasing E°' from +148 to -130 mV significantly impacts electronic properties of the NOR mimics, resulting in 180- and 633-fold enhancements in NO association and heme-nitrosyl decay rates, respectively. Our results indicate that NORs exhibit finely tuned E°' that maximizes their enzymatic efficiency and helps achieve a balance between opposite factors: fast NO binding and decay of dinitrosyl species facilitated by low E°' and fast electron transfer facilitated by high E°'. Only when E°' is optimally tuned in FeBMb(MF-heme) for NO binding, heme-nitrosyl decay, and electron transfer does the protein achieve multiple (>35) turnovers, previously not achieved by synthetic or enzyme-based NOR models. This also explains a long-standing question in bioenergetics of selective cross-reactivity in HCOs. Only HCOs with heme E°' in a similar range as NORs (between -59 and 200 mV) exhibit NOR reactivity. Thus, our work demonstrates efficient tuning of E°' in various metalloproteins for their optimal functionality.

Entities:  

Keywords:  biomimetics; heme-copper oxidase; metalloprotein design; nitric oxide reductase; redox potentials

Mesh:

Substances:

Year:  2018        PMID: 29802230      PMCID: PMC6004492          DOI: 10.1073/pnas.1720298115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

Review 1.  Heme protein assemblies.

Authors:  Charles J Reedy; Brian R Gibney
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

2.  Short Self-Assembling Peptides Are Able to Bind to Copper and Activate Oxygen.

Authors:  Olga V Makhlynets; Pallavi M Gosavi; Ivan V Korendovych
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-08       Impact factor: 15.336

Review 3.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

4.  Introducing a 2-His-1-Glu nonheme iron center into myoglobin confers nitric oxide reductase activity.

Authors:  Ying-Wu Lin; Natasha Yeung; Yi-Gui Gao; Kyle D Miner; Lanyu Lei; Howard Robinson; Yi Lu
Journal:  J Am Chem Soc       Date:  2010-07-28       Impact factor: 15.419

5.  Mechanism for N₂O generation in bacterial nitric oxide reductase: a quantum chemical study.

Authors:  Margareta R A Blomberg; Per E M Siegbahn
Journal:  Biochemistry       Date:  2012-06-14       Impact factor: 3.162

6.  Spectroscopic and computational study of a nonheme iron nitrosyl center in a biosynthetic model of nitric oxide reductase.

Authors:  Saumen Chakraborty; Julian Reed; Matthew Ross; Mark J Nilges; Igor D Petrik; Soumya Ghosh; Sharon Hammes-Schiffer; J Timothy Sage; Yong Zhang; Charles E Schulz; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-31       Impact factor: 15.336

7.  The unusual redox properties of C-type oxidases.

Authors:  Frederic Melin; Hao Xie; Thomas Meyer; Young Ok Ahn; Robert B Gennis; Hartmut Michel; Petra Hellwig
Journal:  Biochim Biophys Acta       Date:  2016-09-21

8.  CO, NO and O2 as Vibrational Probes of Heme Protein Interactions.

Authors:  Thomas G Spiro; Alexandra V Soldatova; Gurusamy Balakrishnan
Journal:  Coord Chem Rev       Date:  2012-06-06       Impact factor: 22.315

9.  O2 reduction by a functional heme/nonheme bis-iron NOR model complex.

Authors:  James P Collman; Abhishek Dey; Ying Yang; Somdatta Ghosh; Richard A Decréau
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

10.  The production of nitrous oxide by the heme/nonheme diiron center of engineered myoglobins (Fe(B)Mbs) proceeds through a trans-iron-nitrosyl dimer.

Authors:  Hirotoshi Matsumura; Takahiro Hayashi; Saumen Chakraborty; Yi Lu; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2014-02-03       Impact factor: 15.419

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  10 in total

1.  Nitric Oxide Reductase Activity in Heme-Nonheme Binuclear Engineered Myoglobins through a One-Electron Reduction Cycle.

Authors:  Sinan Sabuncu; Julian H Reed; Yi Lu; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2018-12-06       Impact factor: 15.419

Review 2.  Biological and Bioinspired Inorganic N-N Bond-Forming Reactions.

Authors:  Christina Ferousi; Sean H Majer; Ida M DiMucci; Kyle M Lancaster
Journal:  Chem Rev       Date:  2020-02-28       Impact factor: 60.622

3.  Rational Design of a Histidine-Methionine Site Modeling the M-Center of Copper Monooxygenases in a Small Metallochaperone Scaffold.

Authors:  Katherine B Alwan; Evan F Welch; Renee J Arias; Ben F Gambill; Ninian J Blackburn
Journal:  Biochemistry       Date:  2019-06-27       Impact factor: 3.162

4.  Mechanism of substrate inhibition in cytochrome-c dependent NO reductases from denitrifying bacteria (cNORs).

Authors:  Hirotoshi Matsumura; Abayomi S Faponle; Peter-Leon Hagedoorn; Takehiko Tosha; Sam P de Visser; Pierre Moënne-Loccoz
Journal:  J Inorg Biochem       Date:  2022-03-01       Impact factor: 4.155

5.  A Nonheme Mononuclear {FeNO}7 Complex that Produces N2 O in the Absence of an Exogenous Reductant.

Authors:  Aniruddha Dey; Jesse B Gordon; Therese Albert; Sinan Sabuncu; Maxime A Siegler; Samantha N MacMillan; Kyle M Lancaster; Pierre Moënne-Loccoz; David P Goldberg
Journal:  Angew Chem Int Ed Engl       Date:  2021-08-20       Impact factor: 16.823

6.  Green and efficient biosynthesis of indigo from indole by engineered myoglobins.

Authors:  Can Liu; Jiakun Xu; Shu-Qin Gao; Bo He; Chuan-Wan Wei; Xiao-Juan Wang; Zhonghua Wang; Ying-Wu Lin
Journal:  RSC Adv       Date:  2018-09-26       Impact factor: 4.036

Review 7.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

8.  Quorum sensing systems regulate heterotrophic nitrification-aerobic denitrification by changing the activity of nitrogen-cycling enzymes.

Authors:  Ziqian Zhu; Yang Yang; Anran Fang; Yu Lou; Guojun Xie; Nanqi Ren; Defeng Xing
Journal:  Environ Sci Ecotechnol       Date:  2020-03-31

Review 9.  Molecular understanding of heteronuclear active sites in heme-copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling.

Authors:  Christopher J Reed; Quan N Lam; Evan N Mirts; Yi Lu
Journal:  Chem Soc Rev       Date:  2021-03-01       Impact factor: 54.564

Review 10.  Engineering of chiral nanomaterials for biomimetic catalysis.

Authors:  Hongyu Zhang; Si Li; Aihua Qu; Changlong Hao; Maozhong Sun; Liguang Xu; Chuanlai Xu; Hua Kuang
Journal:  Chem Sci       Date:  2020-10-21       Impact factor: 9.825

  10 in total

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