Literature DB >> 28221360

Why copper is preferred over iron for oxygen activation and reduction in haem-copper oxidases.

Ambika Bhagi-Damodaran1, Matthew A Michael2, Qianhong Zhu3, Julian Reed4, Braddock A Sandoval1, Evan N Mirts5, Saumen Chakraborty1, Pierre Moënne-Loccoz3, Yong Zhang2, Yi Lu1,4,5.   

Abstract

Haem-copper oxidase (HCO) catalyses the natural reduction of oxygen to water using a haem-copper centre. Despite decades of research on HCOs, the role of non-haem metal and the reason for nature's choice of copper over other metals such as iron remains unclear. Here, we use a biosynthetic model of HCO in myoglobin that selectively binds different non-haem metals to demonstrate 30-fold and 11-fold enhancements in the oxidase activity of Cu- and Fe-bound HCO mimics, respectively, as compared with Zn-bound mimics. Detailed electrochemical, kinetic and vibrational spectroscopic studies, in tandem with theoretical density functional theory calculations, demonstrate that the non-haem metal not only donates electrons to oxygen but also activates it for efficient O-O bond cleavage. Furthermore, the higher redox potential of copper and the enhanced weakening of the O-O bond from the higher electron density in the d orbital of copper are central to its higher oxidase activity over iron. This work resolves a long-standing question in bioenergetics, and renders a chemical-biological basis for the design of future oxygen-reduction catalysts.

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Year:  2016        PMID: 28221360      PMCID: PMC5321616          DOI: 10.1038/nchem.2643

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  44 in total

1.  How oxygen is activated and reduced in respiration.

Authors:  G T Babcock
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

2.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

Review 3.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 4.  Cytochrome oxidase evolved by tinkering with denitrification enzymes.

Authors:  M Saraste; J Castresana
Journal:  FEBS Lett       Date:  1994-03-14       Impact factor: 4.124

5.  Spectroscopic and computational study of a nonheme iron nitrosyl center in a biosynthetic model of nitric oxide reductase.

Authors:  Saumen Chakraborty; Julian Reed; Matthew Ross; Mark J Nilges; Igor D Petrik; Soumya Ghosh; Sharon Hammes-Schiffer; J Timothy Sage; Yong Zhang; Charles E Schulz; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-31       Impact factor: 15.336

6.  The mechanism of autooxidation of myoglobin.

Authors:  R E Brantley; S J Smerdon; A J Wilkinson; E W Singleton; J S Olson
Journal:  J Biol Chem       Date:  1993-04-05       Impact factor: 5.157

7.  O2 reduction by a functional heme/nonheme bis-iron NOR model complex.

Authors:  James P Collman; Abhishek Dey; Ying Yang; Somdatta Ghosh; Richard A Decréau
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

8.  HNO binding in a heme protein: structures, spectroscopic properties, and stabilities.

Authors:  Liu Yang; Yan Ling; Yong Zhang
Journal:  J Am Chem Soc       Date:  2011-08-17       Impact factor: 15.419

9.  Short peptides self-assemble to produce catalytic amyloids.

Authors:  Caroline M Rufo; Yurii S Moroz; Olesia V Moroz; Jan Stöhr; Tyler A Smith; Xiaozhen Hu; William F DeGrado; Ivan V Korendovych
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

10.  Systematic tuning of heme redox potentials and its effects on O2 reduction rates in a designed oxidase in myoglobin.

Authors:  Ambika Bhagi-Damodaran; Igor D Petrik; Nicholas M Marshall; Howard Robinson; Yi Lu
Journal:  J Am Chem Soc       Date:  2014-08-18       Impact factor: 15.419

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  19 in total

Review 1.  Activation of dioxygen by copper metalloproteins and insights from model complexes.

Authors:  David A Quist; Daniel E Diaz; Jeffrey J Liu; Kenneth D Karlin
Journal:  J Biol Inorg Chem       Date:  2016-12-05       Impact factor: 3.358

Review 2.  Advances in chiral nanozymes: a review.

Authors:  Ruofei Zhang; Yunlong Zhou; Xiyun Yan; Kelong Fan
Journal:  Mikrochim Acta       Date:  2019-11-15       Impact factor: 5.833

Review 3.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

4.  Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

Authors:  Ambika Bhagi-Damodaran; Julian H Reed; Qianhong Zhu; Yelu Shi; Parisa Hosseinzadeh; Braddock A Sandoval; Kevin A Harnden; Shuyan Wang; Madeline R Sponholtz; Evan N Mirts; Sudharsan Dwaraknath; Yong Zhang; Pierre Moënne-Loccoz; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-25       Impact factor: 11.205

5.  Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors.

Authors:  Evan N Mirts; Ambika Bhagi-Damodaran; Yi Lu
Journal:  Acc Chem Res       Date:  2019-03-26       Impact factor: 22.384

6.  Biomimetic Reactivity of Oxygen-Derived Manganese and Iron Porphyrinoid Complexes.

Authors:  Regina A Baglia; Jan Paulo T Zaragoza; David P Goldberg
Journal:  Chem Rev       Date:  2017-10-09       Impact factor: 60.622

7.  Mechanisms of HNO Reactions with Ferric Heme Proteins.

Authors:  Yelu Shi; Yong Zhang
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-21       Impact factor: 15.336

Review 8.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

9.  Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism.

Authors:  Julian H Reed; Yelu Shi; Qianhong Zhu; Saumen Chakraborty; Evan N Mirts; Igor D Petrik; Ambika Bhagi-Damodaran; Matthew Ross; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

10.  A water-soluble supramolecular complex that mimics the heme/copper hetero-binuclear site of cytochrome c oxidase.

Authors:  Hiroaki Kitagishi; Daiki Shimoji; Takehiro Ohta; Ryo Kamiya; Yasuhiro Kudo; Akira Onoda; Takashi Hayashi; Jean Weiss; Jennifer A Wytko; Koji Kano
Journal:  Chem Sci       Date:  2018-01-15       Impact factor: 9.825

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