Literature DB >> 24320447

CONRAD--a software framework for cone-beam imaging in radiology.

Andreas Maier1, Hannes G Hofmann, Martin Berger, Peter Fischer, Chris Schwemmer, Haibo Wu, Kerstin Müller, Joachim Hornegger, Jang-Hwan Choi, Christian Riess, Andreas Keil, Rebecca Fahrig.   

Abstract

PURPOSE: In the community of x-ray imaging, there is a multitude of tools and applications that are used in scientific practice. Many of these tools are proprietary and can only be used within a certain lab. Often the same algorithm is implemented multiple times by different groups in order to enable comparison. In an effort to tackle this problem, the authors created CONRAD, a software framework that provides many of the tools that are required to simulate basic processes in x-ray imaging and perform image reconstruction with consideration of nonlinear physical effects.
METHODS: CONRAD is a Java-based state-of-the-art software platform with extensive documentation. It is based on platform-independent technologies. Special libraries offer access to hardware acceleration such as OpenCL. There is an easy-to-use interface for parallel processing. The software package includes different simulation tools that are able to generate up to 4D projection and volume data and respective vector motion fields. Well known reconstruction algorithms such as FBP, DBP, and ART are included. All algorithms in the package are referenced to a scientific source.
RESULTS: A total of 13 different phantoms and 30 processing steps have already been integrated into the platform at the time of writing. The platform comprises 74.000 nonblank lines of code out of which 19% are used for documentation. The software package is available for download at http://conrad.stanford.edu. To demonstrate the use of the package, the authors reconstructed images from two different scanners, a table top system and a clinical C-arm system. Runtimes were evaluated using the RabbitCT platform and demonstrate state-of-the-art runtimes with 2.5 s for the 256 problem size and 12.4 s for the 512 problem size.
CONCLUSIONS: As a common software framework, CONRAD enables the medical physics community to share algorithms and develop new ideas. In particular this offers new opportunities for scientific collaboration and quantitative performance comparison between the methods of different groups.

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Year:  2013        PMID: 24320447      PMCID: PMC3820625          DOI: 10.1118/1.4824926

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  16 in total

1.  Efficient correction for CT image artifacts caused by objects extending outside the scan field of view.

Authors:  B Ohnesorge; T Flohr; K Schwarz; J P Heiken; K T Bae
Journal:  Med Phys       Date:  2000-01       Impact factor: 4.071

2.  A method for including redundant data in computed tomography.

Authors:  M D Silver
Journal:  Med Phys       Date:  2000-04       Impact factor: 4.071

3.  Parker weights revisited.

Authors:  Stefan Wesarg; Matthias Ebert; Thomas Bortfeld
Journal:  Med Phys       Date:  2002-03       Impact factor: 4.071

4.  Image reconstruction from fan-beam projections on less than a short scan.

Authors:  Frédéric Noo; Michel Defrise; Rolf Clackdoyle; Hiroyuki Kudo
Journal:  Phys Med Biol       Date:  2002-07-21       Impact factor: 3.609

5.  Feldkamp-type VOI reconstruction from super-short-scan cone-beam data.

Authors:  Hengyong Yu; Ge Wang
Journal:  Med Phys       Date:  2004-06       Impact factor: 4.071

6.  Engineering and algorithm design for an image processing Api: a technical report on ITK--the Insight Toolkit.

Authors:  Terry S Yoo; Michael J Ackerman; William E Lorensen; Will Schroeder; Vikram Chalana; Stephen Aylward; Dimitris Metaxas; Ross Whitaker
Journal:  Stud Health Technol Inform       Date:  2002

Review 7.  ImageJ for microscopy.

Authors:  Tony J Collins
Journal:  Biotechniques       Date:  2007-07       Impact factor: 1.993

8.  Technical note: RabbitCT--an open platform for benchmarking 3D cone-beam reconstruction algorithms.

Authors:  C Rohkohl; B Keck; H G Hofmann; J Hornegger
Journal:  Med Phys       Date:  2009-09       Impact factor: 4.071

Review 9.  A general framework and review of scatter correction methods in x-ray cone-beam computerized tomography. Part 1: Scatter compensation approaches.

Authors:  Ernst-Peter Rührnschopf; Klaus Klingenbeck
Journal:  Med Phys       Date:  2011-07       Impact factor: 4.071

10.  Realistic CT simulation using the 4D XCAT phantom.

Authors:  W P Segars; M Mahesh; T J Beck; E C Frey; B M W Tsui
Journal:  Med Phys       Date:  2008-08       Impact factor: 4.071

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  23 in total

1.  Fiducial marker-based correction for involuntary motion in weight-bearing C-arm CT scanning of knees. Part I. Numerical model-based optimization.

Authors:  Jang-Hwan Choi; Rebecca Fahrig; Andreas Keil; Thor F Besier; Saikat Pal; Emily J McWalter; Gary S Beaupré; Andreas Maier
Journal:  Med Phys       Date:  2013-09       Impact factor: 4.071

2.  Dynamic detector offsets for field of view extension in C-arm computed tomography with application to weight-bearing imaging.

Authors:  Magdalena Herbst; Frank Schebesch; Martin Berger; Jang-Hwan Choi; Rebecca Fahrig; Joachim Hornegger; Andreas Maier
Journal:  Med Phys       Date:  2015-05       Impact factor: 4.071

3.  Symmetry prior for epipolar consistency.

Authors:  Alexander Preuhs; Andreas Maier; Michael Manhart; Markus Kowarschik; Elisabeth Hoppe; Javad Fotouhi; Nassir Navab; Mathias Unberath
Journal:  Int J Comput Assist Radiol Surg       Date:  2019-07-12       Impact factor: 2.924

4.  Image artefact propagation in motion estimation and reconstruction in interventional cardiac C-arm CT.

Authors:  K Müller; A K Maier; C Schwemmer; G Lauritsch; S De Buck; J-Y Wielandts; J Hornegger; R Fahrig
Journal:  Phys Med Biol       Date:  2014-05-20       Impact factor: 3.609

5.  Fiducial marker-based correction for involuntary motion in weight-bearing C-arm CT scanning of knees. II. Experiment.

Authors:  Jang-Hwan Choi; Andreas Maier; Andreas Keil; Saikat Pal; Emily J McWalter; Gary S Beaupré; Garry E Gold; Rebecca Fahrig
Journal:  Med Phys       Date:  2014-06       Impact factor: 4.071

6.  Marker-free motion correction in weight-bearing cone-beam CT of the knee joint.

Authors:  M Berger; K Müller; A Aichert; M Unberath; J Thies; J-H Choi; R Fahrig; A Maier
Journal:  Med Phys       Date:  2016-03       Impact factor: 4.071

7.  Technical Note: FreeCT_wFBP: A robust, efficient, open-source implementation of weighted filtered backprojection for helical, fan-beam CT.

Authors:  John Hoffman; Stefano Young; Frédéric Noo; Michael McNitt-Gray
Journal:  Med Phys       Date:  2016-03       Impact factor: 4.071

8.  Improved reconstruction of phase-stepping data for Talbot-Lau x-ray imaging.

Authors:  Sebastian Kaeppler; Jens Rieger; Georg Pelzer; Florian Horn; Thilo Michel; Andreas Maier; Gisela Anton; Christian Riess
Journal:  J Med Imaging (Bellingham)       Date:  2017-09-05

9.  Temporal and volumetric denoising via quantile sparse image prior.

Authors:  Franziska Schirrmacher; Thomas Köhler; Jürgen Endres; Tobias Lindenberger; Lennart Husvogt; James G Fujimoto; Joachim Hornegger; Arnd Dörfler; Philip Hoelter; Andreas K Maier
Journal:  Med Image Anal       Date:  2018-06-06       Impact factor: 8.545

10.  Diagnosis of breast cancer based on microcalcifications using grating-based phase contrast CT.

Authors:  Xinbin Li; Hewei Gao; Zhiqiang Chen; Li Zhang; Xiaohua Zhu; Shengping Wang; Weijun Peng
Journal:  Eur Radiol       Date:  2018-01-26       Impact factor: 5.315

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