Literature DB >> 24256417

Interplay of hydrogen bonds and n→π* interactions in proteins.

Gail J Bartlett1, Robert W Newberry, Brett VanVeller, Ronald T Raines, Derek N Woolfson.   

Abstract

Protein structures are stabilized by multiple weak interactions, including the hydrophobic effect, hydrogen bonds, electrostatic effects, and van der Waals interactions. Among these interactions, the hydrogen bond is distinct in having its origins in electron delocalization. Recently, another type of electron delocalization, the n→π* interaction between carbonyl groups, has been shown to play a role in stabilizing protein structure. Here we examine the interplay between hydrogen bonding and n→π* interactions. To address this issue, we used data available from high-resolution protein crystal structures to interrogate asparagine side-chain oxygen atoms that are both acceptors of a hydrogen bond and donors of an n→π* interaction. Then we employed natural bond orbital analysis to determine the relative energetic contributions of the hydrogen bonds and n→π* interactions in these systems. We found that an n→π* interaction is worth ~5-25% of a hydrogen bond and that stronger hydrogen bonds tend to attenuate or obscure n→π* interactions. Conversely, weaker hydrogen bonds correlate with stronger n→π* interactions and demixing of the orbitals occupied by the oxygen lone pairs. Thus, these two interactions conspire to stabilize local backbone-side-chain contacts, which argues for the inclusion of n→π* interactions in the inventory of non-covalent forces that contribute to protein stability and thus in force fields for biomolecular modeling.

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Year:  2013        PMID: 24256417      PMCID: PMC3940535          DOI: 10.1021/ja4106122

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  31 in total

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Authors:  Roman S Erdmann; Helma Wennemers
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

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Journal:  Proteins       Date:  2012-01-07

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9.  New strategies for the design of folded peptoids revealed by a survey of noncovalent interactions in model systems.

Authors:  Benjamin C Gorske; Joseph R Stringer; Brent L Bastian; Sarah A Fowler; Helen E Blackwell
Journal:  J Am Chem Soc       Date:  2009-11-18       Impact factor: 15.419

10.  Nature of amide carbonyl--carbonyl interactions in proteins.

Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

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  28 in total

1.  Local and macroscopic electrostatic interactions in single α-helices.

Authors:  Emily G Baker; Gail J Bartlett; Matthew P Crump; Richard B Sessions; Noah Linden; Charl F J Faul; Derek N Woolfson
Journal:  Nat Chem Biol       Date:  2015-02-09       Impact factor: 15.040

2.  Signatures of n→π* interactions in proteins.

Authors:  Robert W Newberry; Gail J Bartlett; Brett VanVeller; Derek N Woolfson; Ronald T Raines
Journal:  Protein Sci       Date:  2014-03       Impact factor: 6.725

3.  Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures.

Authors:  R N V Krishna Deepak; Ramasubbu Sankararamakrishnan
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  Conformational analysis of short polar side-chain amino-acids through umbrella sampling and DFT calculations.

Authors:  Javier Ramos; Victor L Cruz
Journal:  J Mol Model       Date:  2016-10-26       Impact factor: 1.810

5.  n→π* Interactions Are Competitive with Hydrogen Bonds.

Authors:  Robert W Newberry; Samuel J Orke; Ronald T Raines
Journal:  Org Lett       Date:  2016-07-13       Impact factor: 6.005

Review 6.  Forces stabilizing proteins.

Authors:  C Nick Pace; J Martin Scholtz; Gerald R Grimsley
Journal:  FEBS Lett       Date:  2014-05-17       Impact factor: 4.124

7.  4-Fluoroprolines: Conformational Analysis and Effects on the Stability and Folding of Peptides and Proteins.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Top Heterocycl Chem       Date:  2016-01-12

8.  Comparison of design strategies for α-helix backbone modification in a protein tertiary fold.

Authors:  Nathan A Tavenor; Zachary E Reinert; George A Lengyel; Brian D Griffith; W Seth Horne
Journal:  Chem Commun (Camb)       Date:  2016-03-07       Impact factor: 6.222

9.  A key n→π* Interaction in N-acyl homoserine lactones.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2014-02-26       Impact factor: 5.100

10.  Experimental Atom-by-Atom Dissection of Amide-Amide and Amide-Hydrocarbon Interactions in H2O.

Authors:  Xian Cheng; Irina A Shkel; Kevin O'Connor; John Henrich; Cristen Molzahn; David Lambert; M Thomas Record
Journal:  J Am Chem Soc       Date:  2017-07-17       Impact factor: 15.419

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