Literature DB >> 24256417

Interplay of hydrogen bonds and n→π* interactions in proteins.

Gail J Bartlett1, Robert W Newberry, Brett VanVeller, Ronald T Raines, Derek N Woolfson.   

Abstract

Protein structures are stabilized by multiple weak interactions, including the hydrophobic effect, hydrogen bonds, electrostatic effects, and van der Waals interactions. Among these interactions, the n class="Chemical">hydrogen bond is distinct in having its origins in electron delocalization. Recently, another type of electron delocalization, the n→π* interaction between carbonyl groups, has been shown to play a role in stabilizing protein structure. Here we examine the interplay between hydrogen bonding and n→π* interactions. To address this issue, we used data available from high-resolution protein crystal structures to interrogate asparagine side-chain oxygen atoms that are both acceptors of a hydrogen bond and donors of an n→π* interaction. Then we employed natural bond orbital analysis to determine the relative energetic contributions of the hydrogen bonds and n→π* interactions in these systems. We found that an n→π* interaction is worth ~5-25% of a hydrogen bond and that stronger hydrogen bonds tend to attenuate or obscure n→π* interactions. Conversely, weaker hydrogen bonds correlate with stronger n→π* interactions and demixing of the orbitals occupied by the oxygen lone pairs. Thus, these two interactions conspire to stabilize local backbone-side-chain contacts, which argues for the inclusion of n→π* interactions in the inventory of non-covalent forces that contribute to protein stability and thus in force fields for biomolecular modeling.

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Year:  2013        PMID: 24256417      PMCID: PMC3940535          DOI: 10.1021/ja4106122

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  31 in total

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Authors:  Roman S Erdmann; Helma Wennemers
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

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Authors:  Benjamin C Gorske; Joseph R Stringer; Brent L Bastian; Sarah A Fowler; Helen E Blackwell
Journal:  J Am Chem Soc       Date:  2009-11-18       Impact factor: 15.419

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Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

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  28 in total

1.  Local and macroscopic electrostatic interactions in single α-helices.

Authors:  Emily G Baker; Gail J Bartlett; Matthew P Crump; Richard B Sessions; Noah Linden; Charl F J Faul; Derek N Woolfson
Journal:  Nat Chem Biol       Date:  2015-02-09       Impact factor: 15.040

2.  Signatures of n→π* interactions in proteins.

Authors:  Robert W Newberry; Gail J Bartlett; Brett VanVeller; Derek N Woolfson; Ronald T Raines
Journal:  Protein Sci       Date:  2014-03       Impact factor: 6.725

3.  Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures.

Authors:  R N V Krishna Deepak; Ramasubbu Sankararamakrishnan
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

4.  Conformational analysis of short polar side-chain amino-acids through umbrella sampling and DFT calculations.

Authors:  Javier Ramos; Victor L Cruz
Journal:  J Mol Model       Date:  2016-10-26       Impact factor: 1.810

5.  n→π* Interactions Are Competitive with Hydrogen Bonds.

Authors:  Robert W Newberry; Samuel J Orke; Ronald T Raines
Journal:  Org Lett       Date:  2016-07-13       Impact factor: 6.005

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7.  4-Fluoroprolines: Conformational Analysis and Effects on the Stability and Folding of Peptides and Proteins.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Top Heterocycl Chem       Date:  2016-01-12

8.  Comparison of design strategies for α-helix backbone modification in a protein tertiary fold.

Authors:  Nathan A Tavenor; Zachary E Reinert; George A Lengyel; Brian D Griffith; W Seth Horne
Journal:  Chem Commun (Camb)       Date:  2016-03-07       Impact factor: 6.222

9.  A key n→π* Interaction in N-acyl homoserine lactones.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2014-02-26       Impact factor: 5.100

10.  Experimental Atom-by-Atom Dissection of Amide-Amide and Amide-Hydrocarbon Interactions in H2O.

Authors:  Xian Cheng; Irina A Shkel; Kevin O'Connor; John Henrich; Cristen Molzahn; David Lambert; M Thomas Record
Journal:  J Am Chem Soc       Date:  2017-07-17       Impact factor: 15.419

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