Literature DB >> 28690684

4-Fluoroprolines: Conformational Analysis and Effects on the Stability and Folding of Peptides and Proteins.

Robert W Newberry1, Ronald T Raines1.   

Abstract

Proline is unique among proteinogenic amino acids because a pyrrolidine ring links its amino group to its side chain. This heterocycle constrains the conformations of the main chain and thus templates particular secondary structures. Proline residues undergo post-translational modification at the 4-position to yield 4-hydroxyproline, which is especially prevalent in collagen. Interest in characterizing the effects of this modification led to the use of 4-fluoroprolines to enhance inductive properties relative to the hydroxyl group of 4-hydroxyproline and to eliminate contributions from hydrogen bonding. The strong inductive effect of the fluoro group has three main consequences: enforcing a particular pucker upon the pyrrolidine ring, biasing the conformation of the preceding peptide bond, and accelerating cis/trans prolyl peptide bond isomerization. These subtle, yet reliable modulations make 4-fluoroproline-incorporation a complement to traditional genetic approaches for exploring structure-function relationships in peptides and proteins, as well as for endowing peptides and proteins with conformational stability.

Entities:  

Keywords:  collagen; gauche effect; n→π* interaction; pyrrolidine; stereoelectronic effect

Year:  2016        PMID: 28690684      PMCID: PMC5501414          DOI: 10.1007/7081_2015_196

Source DB:  PubMed          Journal:  Top Heterocycl Chem


  117 in total

Review 1.  Metabolism of fluorine-containing drugs.

Authors:  B K Park; N R Kitteringham; P M O'Neill
Journal:  Annu Rev Pharmacol Toxicol       Date:  2001       Impact factor: 13.820

2.  Conformational stability of collagen relies on a stereoelectronic effect.

Authors:  L E Bretscher; C L Jenkins; K M Taylor; M L DeRider; R T Raines
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

3.  Whole-body kinetics and dosimetry of cis-4-[(18)F]fluoro-L-proline.

Authors:  A R Börner; K J Langen; H Herzog; K Hamacher; V Müller-Mattheis; T Schmitz; R Ackermann; H H Coenen
Journal:  Nucl Med Biol       Date:  2001-04       Impact factor: 2.408

4.  Prolyl 4-hydroxylase is an essential procollagen-modifying enzyme required for exoskeleton formation and the maintenance of body shape in the nematode Caenorhabditis elegans.

Authors:  A D Winter; A P Page
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

Review 5.  Elastin: molecular description and function.

Authors:  L Debelle; A M Tamburro
Journal:  Int J Biochem Cell Biol       Date:  1999-02       Impact factor: 5.085

6.  Understanding the role of stereoelectronic effects in determining collagen stability. 1. A quantum mechanical study of proline, hydroxyproline, and fluoroproline dipeptide analogues in aqueous solution.

Authors:  R Improta; C Benzi; V Barone
Journal:  J Am Chem Soc       Date:  2001-12-19       Impact factor: 15.419

7.  1H NMR study on the binding of Pin1 Trp-Trp domain with phosphothreonine peptides.

Authors:  R Wintjens; J M Wieruszeski; H Drobecq; P Rousselot-Pailley; L Buée; G Lippens; I Landrieu
Journal:  J Biol Chem       Date:  2001-04-19       Impact factor: 5.157

8.  Preclinical evaluation of 4-[18F]fluoroprolines: diastereomeric effect on metabolism and uptake in mice.

Authors:  H J Wester; M Herz; R Senekowitsch-Schmidtke; M Schwaiger; G Stöcklin; K Hamacher
Journal:  Nucl Med Biol       Date:  1999-04       Impact factor: 2.408

9.  Prolyl 4-hydroxylase is required for viability and morphogenesis in Caenorhabditis elegans.

Authors:  L Friedman; J J Higgin; G Moulder; R Barstead; R T Raines; J Kimble
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

10.  A hyperstable collagen mimic.

Authors:  S K Holmgren; L E Bretscher; K M Taylor; R T Raines
Journal:  Chem Biol       Date:  1999-02
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  13 in total

1.  n→π* Interactions Modulate the Disulfide Reduction Potential of Epidithiodiketopiperazines.

Authors:  Henry R Kilgore; Chase R Olsson; Kyan A D'Angelo; Mohammad Movassaghi; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2020-08-21       Impact factor: 15.419

2.  Optimization of interstrand interactions enables burn detection with a collagen-mimetic peptide.

Authors:  Jesús M Dones; I Caglar Tanrikulu; Jenu V Chacko; Alexandra B Schroeder; Trish T Hoang; Angela L F Gibson; Kevin W Eliceiri; Ronald T Raines
Journal:  Org Biomol Chem       Date:  2019-11-27       Impact factor: 3.876

3.  Parallel Glyco-SPOT Synthesis of Glycopeptide Libraries.

Authors:  Akul Y Mehta; Ravi Kumar H Veeraiah; Sucharita Dutta; Christoffer K Goth; Melinda S Hanes; Chao Gao; Kathrin Stavenhagen; Robert Kardish; Yasuyuki Matsumoto; Jamie Heimburg-Molinaro; Michael Boyce; Nicola L B Pohl; Richard D Cummings
Journal:  Cell Chem Biol       Date:  2020-06-30       Impact factor: 8.116

4.  Bifunctional Peptide that Anneals to Damaged Collagen and Clusters TGF-β Receptors Enhances Wound Healing.

Authors:  Sayani Chattopadhyay; Leandro B C Teixeira; Laura L Kiessling; Jonathan F McAnulty; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2022-01-27       Impact factor: 5.100

Review 5.  Perspectives on conformationally constrained peptide nucleic acid (PNA): insights into the structural design, properties and applications.

Authors:  Chaturong Suparpprom; Tirayut Vilaivan
Journal:  RSC Chem Biol       Date:  2022-03-18

6.  Catalysis of Hydrogen-Deuterium Exchange Reactions by 4-Substituted Proline Derivatives.

Authors:  Eddie L Myers; Michael J Palte; Ronald T Raines
Journal:  J Org Chem       Date:  2019-01-14       Impact factor: 4.354

7.  Hydrolysis, polarity, and conformational impact of C-terminal partially fluorinated ethyl esters in peptide models.

Authors:  Vladimir Kubyshkin; Nediljko Budisa
Journal:  Beilstein J Org Chem       Date:  2017-11-16       Impact factor: 2.883

8.  The n→π* Interaction.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Acc Chem Res       Date:  2017-07-23       Impact factor: 22.384

Review 9.  Biochemistry of fluoroprolines: the prospect of making fluorine a bioelement.

Authors:  Vladimir Kubyshkin; Rebecca Davis; Nediljko Budisa
Journal:  Beilstein J Org Chem       Date:  2021-02-15       Impact factor: 2.883

Review 10.  Natural and Synthetic Halogenated Amino Acids-Structural and Bioactive Features in Antimicrobial Peptides and Peptidomimetics.

Authors:  Mario Mardirossian; Marina Rubini; Mauro F A Adamo; Marco Scocchi; Michele Saviano; Alessandro Tossi; Renato Gennaro; Andrea Caporale
Journal:  Molecules       Date:  2021-12-06       Impact factor: 4.411

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