Literature DB >> 22992124

Effect of sterically demanding substituents on the conformational stability of the collagen triple helix.

Roman S Erdmann1, Helma Wennemers.   

Abstract

The effect of sterically demanding groups at proline residues on the conformational stability of the collagen triple helix was examined. The thermal stabilities (T(m) and ΔG) of eight different triple helices derived from collagen model peptides with (4R)- or (4S)-configured amidoprolines bearing either methyl or bulkier tert-butyl groups in the Xaa or Yaa position were determined and served as a relative measure for the conformational stability of the corresponding collagen triple helices. The results show that sterically demanding substituents are tolerated in the collagen triple helix when they are attached to (4R)-configured amidoprolines in the Xaa position or to (4S)-configured amidoprolines in the Yaa position. Structural studies in which the preferred conformation of (4R)- or (4S)-configured amidoproline were overlaid with the Pro and Hyp residues within a crystal structure of collagen revealed that the sterically demanding groups point to the outside of these two triple helices and thereby do not interfere with the formation of the triple helix. In all of the other examined collagen derivatives with lower stability of the triple helices, the acetyl or pivaloyl residues point toward the inside of the triple helix and clash with a residue of the neighboring strand. The results also revealed that unfavorable steric dispositions affect the conformational stability of the collagen triple helix more than unfavorable ring puckers of the proline residues. The results are useful for the design of functionalized collagen based materials.

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Year:  2012        PMID: 22992124     DOI: 10.1021/ja3066418

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  n→π* Interactions Modulate the Properties of Cysteine Residues and Disulfide Bonds in Proteins.

Authors:  Henry R Kilgore; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2018-12-06       Impact factor: 15.419

2.  n→π* Interactions Are Competitive with Hydrogen Bonds.

Authors:  Robert W Newberry; Samuel J Orke; Ronald T Raines
Journal:  Org Lett       Date:  2016-07-13       Impact factor: 6.005

3.  n→π* Interactions Modulate the Disulfide Reduction Potential of Epidithiodiketopiperazines.

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Journal:  J Am Chem Soc       Date:  2020-08-21       Impact factor: 15.419

4.  Intimate interactions with carbonyl groups: dipole-dipole or n→π*?

Authors:  Kimberli J Kamer; Amit Choudhary; Ronald T Raines
Journal:  J Org Chem       Date:  2012-12-10       Impact factor: 4.354

5.  Thioamides in the collagen triple helix.

Authors:  Robert W Newberry; Brett VanVeller; Ronald T Raines
Journal:  Chem Commun (Camb)       Date:  2015-06-14       Impact factor: 6.222

6.  Interplay of hydrogen bonds and n→π* interactions in proteins.

Authors:  Gail J Bartlett; Robert W Newberry; Brett VanVeller; Ronald T Raines; Derek N Woolfson
Journal:  J Am Chem Soc       Date:  2013-12-03       Impact factor: 15.419

7.  4-ketoproline: An electrophilic proline analog for bioconjugation.

Authors:  Amit Choudhary; Kimberli J Kamer; Matthew D Shoulders; Ronald T Raines
Journal:  Biopolymers       Date:  2015-03       Impact factor: 2.505

Review 8.  Targeting and mimicking collagens via triple helical peptide assembly.

Authors:  Yang Li; S Michael Yu
Journal:  Curr Opin Chem Biol       Date:  2013-11-05       Impact factor: 8.822

9.  A Single Stereodynamic Center Modulates the Rate of Self-Assembly in a Biomolecular System.

Authors:  Yitao Zhang; Roy M Malamakal; David M Chenoweth
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-23       Impact factor: 15.336

10.  An n→π* interaction reduces the electrophilicity of the acceptor carbonyl group.

Authors:  Amit Choudhary; Charles G Fry; Kimberli J Kamer; Ronald T Raines
Journal:  Chem Commun (Camb)       Date:  2013-09-25       Impact factor: 6.222

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