Literature DB >> 24123579

Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.

Ira L Blitz1, Jacob Biesinger, Xiaohui Xie, Ken W Y Cho.   

Abstract

Gene inactivation is an important tool for correlation of phenotypic and genomic data, allowing researchers to infer normal gene function based on the phenotype when the gene is impaired. New and better approaches are needed to overcome the shortfalls of existing methods for any significant acceleration of scientific progress. We have adapted the CRISPR/Cas system for use in Xenopus tropicalis and report on the efficient creation of mutations in the gene encoding the enzyme tyrosinase, which is responsible for oculocutaneous albinism. Biallelic mutation of this gene was detected in the F0 generation, suggesting targeting efficiencies similar to that of TALENs. We also find that off-target mutagenesis seems to be negligible, and therefore, CRISPR/Cas may be a useful system for creating genome modifications in this important model organism.
Copyright © 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  CRISPR/Cas; TALENs; gene knockouts; gene targeting; zinc finger nucleases

Mesh:

Substances:

Year:  2013        PMID: 24123579      PMCID: PMC4039559          DOI: 10.1002/dvg.22719

Source DB:  PubMed          Journal:  Genesis        ISSN: 1526-954X            Impact factor:   2.487


  28 in total

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Authors:  Devaki Bhaya; Michelle Davison; Rodolphe Barrangou
Journal:  Annu Rev Genet       Date:  2011       Impact factor: 16.830

2.  Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Authors:  Yong Lei; Xiaogang Guo; Yun Liu; Yang Cao; Yi Deng; Xiongfeng Chen; Christopher H K Cheng; Igor B Dawid; Yonglong Chen; Hui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

3.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

4.  BXR, an embryonic orphan nuclear receptor activated by a novel class of endogenous benzoate metabolites.

Authors:  B Blumberg; H Kang; J Bolado; H Chen; A G Craig; T A Moreno; K Umesono; T Perlmann; E M De Robertis; R M Evans
Journal:  Genes Dev       Date:  1998-05-01       Impact factor: 11.361

5.  Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases.

Authors:  John J Young; Jennifer M Cherone; Yannick Doyon; Irina Ankoudinova; Farhoud M Faraji; Andrew H Lee; Catherine Ngo; Dmitry Y Guschin; David E Paschon; Jeffrey C Miller; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Richard M Harland; Bryan Zeitler
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-06       Impact factor: 11.205

6.  Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system.

Authors:  Andrew R Bassett; Charlotte Tibbit; Chris P Ponting; Ji-Long Liu
Journal:  Cell Rep       Date:  2013-07-01       Impact factor: 9.423

7.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

8.  Generation of gene disruptions by transcription activator-like effector nucleases (TALENs) in Xenopus tropicalis embryos.

Authors:  Yong Lei; Xiaogang Guo; Yi Deng; Yonglong Chen; Hui Zhao
Journal:  Cell Biosci       Date:  2013-05-10       Impact factor: 7.133

9.  Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease.

Authors:  Scott J Gratz; Alexander M Cummings; Jennifer N Nguyen; Danielle C Hamm; Laura K Donohue; Melissa M Harrison; Jill Wildonger; Kate M O'Connor-Giles
Journal:  Genetics       Date:  2013-05-24       Impact factor: 4.562

10.  CRISPR/Cas9 systems targeting β-globin and CCR5 genes have substantial off-target activity.

Authors:  Thomas J Cradick; Eli J Fine; Christopher J Antico; Gang Bao
Journal:  Nucleic Acids Res       Date:  2013-08-11       Impact factor: 16.971

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  88 in total

1.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients.

Authors:  Takuya Nakayama; Marilyn Fisher; Keisuke Nakajima; Akinleye O Odeleye; Keith B Zimmerman; Margaret B Fish; Yoshio Yaoita; Jena L Chojnowski; James D Lauderdale; Peter A Netland; Robert M Grainger
Journal:  Dev Biol       Date:  2015-02-25       Impact factor: 3.582

3.  In vivo investigation of cilia structure and function using Xenopus.

Authors:  Eric R Brooks; John B Wallingford
Journal:  Methods Cell Biol       Date:  2015-03-09       Impact factor: 1.441

4.  An interspecies heart-to-heart: Using Xenopus to uncover the genetic basis of congenital heart disease.

Authors:  Alexandra MacColl Garfinkel; Mustafa K Khokha
Journal:  Curr Pathobiol Rep       Date:  2017-05-06

5.  Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9.

Authors:  Bridget D DeLay; Mark E Corkins; Hannah L Hanania; Matthew Salanga; Jian Min Deng; Norihiro Sudou; Masanori Taira; Marko E Horb; Rachel K Miller
Journal:  Genetics       Date:  2017-11-29       Impact factor: 4.562

6.  Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis.

Authors:  Takuya Nakayama; Margaret B Fish; Marilyn Fisher; Jamina Oomen-Hajagos; Gerald H Thomsen; Robert M Grainger
Journal:  Genesis       Date:  2013-12       Impact factor: 2.487

7.  Histone methyltransferase Dot1L is a coactivator for thyroid hormone receptor during Xenopus development.

Authors:  Luan Wen; Liezhen Fu; Yun-Bo Shi
Journal:  FASEB J       Date:  2017-07-24       Impact factor: 5.191

8.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

Review 9.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

10.  Functional Studies of Transcriptional Cofactors via Microinjection-Mediated Gene Editing in Xenopus.

Authors:  Yuki Shibata; Lingyu Bao; Liezhen Fu; Bingyin Shi; Yun-Bo Shi
Journal:  Methods Mol Biol       Date:  2019
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