Literature DB >> 23045671

Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Yong Lei1, Xiaogang Guo, Yun Liu, Yang Cao, Yi Deng, Xiongfeng Chen, Christopher H K Cheng, Igor B Dawid, Yonglong Chen, Hui Zhao.   

Abstract

Transcription activator-like effector nucleases (TALENs) are an approach for directed gene disruption and have been proved to be effective in various animal models. Here, we report that TALENs can induce somatic mutations in Xenopus embryos with reliably high efficiency and that such mutations are heritable through germ-line transmission. We modified the Golden Gate method for TALEN assembly to make the product suitable for RNA transcription and microinjection into Xenopus embryos. Eight pairs of TALENs were constructed to target eight Xenopus genes, and all resulted in indel mutations with high efficiencies of up to 95.7% at the targeted loci. Furthermore, mutations induced by TALENs were highly efficiently passed through the germ line to F(1) frogs. Together with simple and reliable PCR-based approaches for detecting TALEN-induced mutations, our results indicate that TALENs are an effective tool for targeted gene editing/knockout in Xenopus.

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Year:  2012        PMID: 23045671      PMCID: PMC3491516          DOI: 10.1073/pnas.1215421109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  TAL effectors: finding plant genes for disease and defense.

Authors:  Adam J Bogdanove; Sebastian Schornack; Thomas Lahaye
Journal:  Curr Opin Plant Biol       Date:  2010-06-01       Impact factor: 7.834

2.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

Review 3.  TAL effector-DNA specificity.

Authors:  Heidi Scholze; Jens Boch
Journal:  Virulence       Date:  2010 Sep-Oct       Impact factor: 5.882

4.  Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavage.

Authors:  Mala Mani; Jeff Smith; Karthikeyan Kandavelou; Jeremy M Berg; Srinivasan Chandrasegaran
Journal:  Biochem Biophys Res Commun       Date:  2005-09-09       Impact factor: 3.575

5.  An improved zinc-finger nuclease architecture for highly specific genome editing.

Authors:  Jeffrey C Miller; Michael C Holmes; Jianbin Wang; Dmitry Y Guschin; Ya-Li Lee; Igor Rupniewski; Christian M Beausejour; Adam J Waite; Nathaniel S Wang; Kenneth A Kim; Philip D Gregory; Carl O Pabo; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2007-07-01       Impact factor: 54.908

Review 6.  Xanthomonas AvrBs3 family-type III effectors: discovery and function.

Authors:  Jens Boch; Ulla Bonas
Journal:  Annu Rev Phytopathol       Date:  2010       Impact factor: 13.078

7.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

8.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

9.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

10.  Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Authors:  Jeffry D Sander; Elizabeth J Dahlborg; Mathew J Goodwin; Lindsay Cade; Feng Zhang; Daniel Cifuentes; Shaun J Curtin; Jessica S Blackburn; Stacey Thibodeau-Beganny; Yiping Qi; Christopher J Pierick; Ellen Hoffman; Morgan L Maeder; Cyd Khayter; Deepak Reyon; Drena Dobbs; David M Langenau; Robert M Stupar; Antonio J Giraldez; Daniel F Voytas; Randall T Peterson; Jing-Ruey J Yeh; J Keith Joung
Journal:  Nat Methods       Date:  2010-12-12       Impact factor: 28.547

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  107 in total

1.  Histone methyltransferase Dot1L plays a role in postembryonic development in Xenopus tropicalis.

Authors:  Luan Wen; Liezhen Fu; Xiaogang Guo; Yonglong Chen; Yun-Bo Shi
Journal:  FASEB J       Date:  2014-11-03       Impact factor: 5.191

Review 2.  Determining the specificities of TALENs, Cas9, and other genome-editing enzymes.

Authors:  Vikram Pattanayak; John P Guilinger; David R Liu
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

3.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

4.  Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients.

Authors:  Takuya Nakayama; Marilyn Fisher; Keisuke Nakajima; Akinleye O Odeleye; Keith B Zimmerman; Margaret B Fish; Yoshio Yaoita; Jena L Chojnowski; James D Lauderdale; Peter A Netland; Robert M Grainger
Journal:  Dev Biol       Date:  2015-02-25       Impact factor: 3.582

5.  Generation of RAG 1- and 2-deficient rabbits by embryo microinjection of TALENs.

Authors:  Jun Song; Juan Zhong; Xiaogang Guo; Yongqiang Chen; Qingjian Zou; Jiao Huang; Xiaoping Li; Quanjun Zhang; Zhiwu Jiang; Chengcheng Tang; Huaqiang Yang; Tao Liu; Peng Li; Duanqing Pei; Liangxue Lai
Journal:  Cell Res       Date:  2013-07-09       Impact factor: 25.617

Review 6.  Emerging tools for synthetic genome design.

Authors:  Bo-Rahm Lee; Suhyung Cho; Yoseb Song; Sun Chang Kim; Byung-Kwan Cho
Journal:  Mol Cells       Date:  2013-05-02       Impact factor: 5.034

7.  Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.

Authors:  Ira L Blitz; Jacob Biesinger; Xiaohui Xie; Ken W Y Cho
Journal:  Genesis       Date:  2013-11-21       Impact factor: 2.487

8.  Highly efficient targeted mutagenesis in axolotl using Cas9 RNA-guided nuclease.

Authors:  G Parker Flowers; Andrew T Timberlake; Kaitlin C McLean; James R Monaghan; Craig M Crews
Journal:  Development       Date:  2014-04-24       Impact factor: 6.868

9.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

10.  Functional Studies of Transcriptional Cofactors via Microinjection-Mediated Gene Editing in Xenopus.

Authors:  Yuki Shibata; Lingyu Bao; Liezhen Fu; Bingyin Shi; Yun-Bo Shi
Journal:  Methods Mol Biol       Date:  2019
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