Literature DB >> 21471457

Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases.

John J Young1, Jennifer M Cherone, Yannick Doyon, Irina Ankoudinova, Farhoud M Faraji, Andrew H Lee, Catherine Ngo, Dmitry Y Guschin, David E Paschon, Jeffrey C Miller, Lei Zhang, Edward J Rebar, Philip D Gregory, Fyodor D Urnov, Richard M Harland, Bryan Zeitler.   

Abstract

The frog Xenopus, an important research organism in cell and developmental biology, currently lacks tools for targeted mutagenesis. Here, we address this problem by genome editing with zinc-finger nucleases (ZFNs). ZFNs directed against an eGFP transgene in Xenopus tropicalis induced mutations consistent with nonhomologous end joining at the target site, resulting in mosaic loss of the fluorescence phenotype at high frequencies. ZFNs directed against the noggin gene produced tadpoles and adult animals carrying up to 47% disrupted alleles, and founder animals yielded progeny carrying insertions and deletions in the noggin gene with no indication of off-target effects. Furthermore, functional tests demonstrated an allelic series of activity between three germ-line mutant alleles. Because ZFNs can be designed against any locus, our data provide a generally applicable protocol for gene disruption in Xenopus.

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Year:  2011        PMID: 21471457      PMCID: PMC3084115          DOI: 10.1073/pnas.1102030108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  The introduction of Xenopus laevis into developmental biology: of empire, pregnancy testing and ribosomal genes.

Authors:  J B Gurdon; N Hopwood
Journal:  Int J Dev Biol       Date:  2000       Impact factor: 2.203

2.  Stimulation of homologous recombination through targeted cleavage by chimeric nucleases.

Authors:  M Bibikova; D Carroll; D J Segal; J K Trautman; J Smith; Y G Kim; S Chandrasegaran
Journal:  Mol Cell Biol       Date:  2001-01       Impact factor: 4.272

3.  Structural basis of BMP signalling inhibition by the cystine knot protein Noggin.

Authors:  Jay Groppe; Jason Greenwald; Ezra Wiater; Joaquin Rodriguez-Leon; Aris N Economides; Witek Kwiatkowski; Markus Affolter; Wylie W Vale; Juan Carlos Izpisua Belmonte; Senyon Choe
Journal:  Nature       Date:  2002-12-12       Impact factor: 49.962

4.  Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.

Authors:  Marina Bibikova; Mary Golic; Kent G Golic; Dana Carroll
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

5.  Elr-type proteins protect Xenopus Dead end mRNA from miR-18-mediated clearance in the soma.

Authors:  Katja Koebernick; Jana Loeber; Patrick Kobina Arthur; Katsiaryna Tarbashevich; Tomas Pieler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-30       Impact factor: 11.205

6.  The BMP antagonist noggin regulates cranial suture fusion.

Authors:  Stephen M Warren; Lisa J Brunet; Richard M Harland; Aris N Economides; Michael T Longaker
Journal:  Nature       Date:  2003-04-10       Impact factor: 49.962

7.  The organizer factors Chordin and Noggin are required for mouse forebrain development.

Authors:  D Bachiller; J Klingensmith; C Kemp; J A Belo; R M Anderson; S R May; J A McMahon; A P McMahon; R M Harland; J Rossant; E M De Robertis
Journal:  Nature       Date:  2000-02-10       Impact factor: 49.962

8.  Human disease-causing NOG missense mutations: effects on noggin secretion, dimer formation, and bone morphogenetic protein binding.

Authors:  J Marcelino; C M Sciortino; M F Romero; L M Ulatowski; R T Ballock; A N Economides; P M Eimon; R M Harland; M L Warman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-18       Impact factor: 11.205

9.  Generation of knockout rats with X-linked severe combined immunodeficiency (X-SCID) using zinc-finger nucleases.

Authors:  Tomoji Mashimo; Akiko Takizawa; Birger Voigt; Kazuto Yoshimi; Hiroshi Hiai; Takashi Kuramoto; Tadao Serikawa
Journal:  PLoS One       Date:  2010-01-25       Impact factor: 3.240

10.  Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes.

Authors:  J Miller; A D McLachlan; A Klug
Journal:  EMBO J       Date:  1985-06       Impact factor: 11.598

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  56 in total

Review 1.  Zinc-finger nucleases for somatic gene therapy: the next frontier.

Authors:  Shamim H Rahman; Morgan L Maeder; J Keith Joung; Toni Cathomen
Journal:  Hum Gene Ther       Date:  2011-07-22       Impact factor: 5.695

2.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

3.  Genome editing with CompoZr custom zinc finger nucleases (ZFNs).

Authors:  Keith Hansen; Matthew J Coussens; Jack Sago; Shilpi Subramanian; Monika Gjoka; Dave Briner
Journal:  J Vis Exp       Date:  2012-06-14       Impact factor: 1.355

4.  Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.

Authors:  Ira L Blitz; Jacob Biesinger; Xiaohui Xie; Ken W Y Cho
Journal:  Genesis       Date:  2013-11-21       Impact factor: 2.487

5.  Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis.

Authors:  Takuya Nakayama; Margaret B Fish; Marilyn Fisher; Jamina Oomen-Hajagos; Gerald H Thomsen; Robert M Grainger
Journal:  Genesis       Date:  2013-12       Impact factor: 2.487

Review 6.  Genome engineering with zinc-finger nucleases.

Authors:  Dana Carroll
Journal:  Genetics       Date:  2011-08       Impact factor: 4.562

Review 7.  TALENs: a widely applicable technology for targeted genome editing.

Authors:  J Keith Joung; Jeffry D Sander
Journal:  Nat Rev Mol Cell Biol       Date:  2012-11-21       Impact factor: 94.444

8.  Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Authors:  Yong Lei; Xiaogang Guo; Yun Liu; Yang Cao; Yi Deng; Xiongfeng Chen; Christopher H K Cheng; Igor B Dawid; Yonglong Chen; Hui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

Review 9.  Advances in targeted genome editing.

Authors:  Pablo Perez-Pinera; David G Ousterout; Charles A Gersbach
Journal:  Curr Opin Chem Biol       Date:  2012-07-20       Impact factor: 8.822

10.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

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