Literature DB >> 25398349

Cas9-based genome editing in Xenopus tropicalis.

Takuya Nakayama1, Ira L Blitz2, Margaret B Fish2, Akinleye O Odeleye1, Sumanth Manohar1, Ken W Y Cho2, Robert M Grainger3.   

Abstract

Xenopus tropicalis has been developed as a model organism for developmental biology, providing a system offering both modern genetics and classical embryology. Recently, the Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-associated (CRISPR/Cas) system for genome modification has provided an additional tool for Xenopus researchers to achieve simple and efficient targeted mutagenesis. Here, we provide insights into experimental design and procedures permitting successful application of this technique to Xenopus researchers, and offer a general strategy for performing loss-of-function assays in F0 and subsequently F1 embryos.

Entities:  

Keywords:  Amphibian mutagenesis; CRISPR; Disease model; Genome engineering; Loss-of-function; Off-target effects; Targeted mutagenesis; sgRNA design

Mesh:

Substances:

Year:  2014        PMID: 25398349      PMCID: PMC4284096          DOI: 10.1016/B978-0-12-801185-0.00017-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  42 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis.

Authors:  Xiaogang Guo; Tiejun Zhang; Zheng Hu; Yanqi Zhang; Zhaoying Shi; Qinhu Wang; Yan Cui; Fengqin Wang; Hui Zhao; Yonglong Chen
Journal:  Development       Date:  2014-01-08       Impact factor: 6.868

3.  Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Authors:  Yong Lei; Xiaogang Guo; Yun Liu; Yang Cao; Yi Deng; Xiongfeng Chen; Christopher H K Cheng; Igor B Dawid; Yonglong Chen; Hui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

Review 4.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

5.  Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly.

Authors:  Hye Joo Kim; Hyung Joo Lee; Hyojin Kim; Seung Woo Cho; Jin-Soo Kim
Journal:  Genome Res       Date:  2009-05-21       Impact factor: 9.043

6.  Targeted gene disruption in the Xenopus tropicalis genome using designed TALE nucleases.

Authors:  Keisuke Nakajima; Yuya Nakai; Morihiro Okada; Yoshio Yaoita
Journal:  Zoolog Sci       Date:  2013-06       Impact factor: 0.931

7.  Xenopus mutant reveals necessity of rax for specifying the eye field which otherwise forms tissue with telencephalic and diencephalic character.

Authors:  Margaret B Fish; Takuya Nakayama; Marilyn Fisher; Nicolas Hirsch; Amanda Cox; Rollin Reeder; Samantha Carruthers; Amanda Hall; Derek L Stemple; Robert M Grainger
Journal:  Dev Biol       Date:  2014-09-16       Impact factor: 3.582

8.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

9.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

10.  Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.

Authors:  Yanfang Fu; Jeffry D Sander; Deepak Reyon; Vincent M Cascio; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-01-26       Impact factor: 54.908

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  35 in total

Review 1.  Mechanisms of gene targeting in higher eukaryotes.

Authors:  Akinori Tokunaga; Hirofumi Anai; Katsuhiro Hanada
Journal:  Cell Mol Life Sci       Date:  2015-10-27       Impact factor: 9.261

Review 2.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

3.  Leapfrogging: primordial germ cell transplantation permits recovery of CRISPR/Cas9-induced mutations in essential genes.

Authors:  Ira L Blitz; Margaret B Fish; Ken W Y Cho
Journal:  Development       Date:  2016-07-06       Impact factor: 6.868

4.  High-efficiency non-mosaic CRISPR-mediated knock-in and indel mutation in F0 Xenopus.

Authors:  Yetki Aslan; Emmanuel Tadjuidje; Aaron M Zorn; Sang-Wook Cha
Journal:  Development       Date:  2017-07-10       Impact factor: 6.868

5.  The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation.

Authors:  Makoto Nakamura; Hitoshi Yoshida; Eri Takahashi; Marcin Wlizla; Kimiko Takebayashi-Suzuki; Marko E Horb; Atsushi Suzuki
Journal:  Biochem Biophys Res Commun       Date:  2019-12-04       Impact factor: 3.575

6.  Rapid reverse genetic screening using CRISPR in zebrafish.

Authors:  Arish N Shah; Crystal F Davey; Alex C Whitebirch; Adam C Miller; Cecilia B Moens
Journal:  Nat Methods       Date:  2015-04-13       Impact factor: 28.547

7.  Primordial Germ Cell Transplantation for CRISPR/Cas9-based Leapfrogging in Xenopus.

Authors:  Ira L Blitz
Journal:  J Vis Exp       Date:  2018-02-01       Impact factor: 1.355

Review 8.  Using Xenopus to discover new genes involved in branchiootorenal spectrum disorders.

Authors:  Sally A Moody; Karen M Neilson; Kristy L Kenyon; Dominique Alfandari; Francesca Pignoni
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2015-06-24       Impact factor: 3.228

9.  Distinct cis-acting regions control six6 expression during eye field and optic cup stages of eye formation.

Authors:  Kelley L Ledford; Reyna I Martinez-De Luna; Matthew A Theisen; Karisa D Rawlins; Andrea S Viczian; Michael E Zuber
Journal:  Dev Biol       Date:  2017-04-21       Impact factor: 3.582

10.  Functional Studies of Transcriptional Cofactors via Microinjection-Mediated Gene Editing in Xenopus.

Authors:  Yuki Shibata; Lingyu Bao; Liezhen Fu; Bingyin Shi; Yun-Bo Shi
Journal:  Methods Mol Biol       Date:  2019
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