Literature DB >> 24123613

Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis.

Takuya Nakayama, Margaret B Fish, Marilyn Fisher, Jamina Oomen-Hajagos, Gerald H Thomsen, Robert M Grainger.   

Abstract

We have assessed the efficacy of the recently developed CRISPR/Cas (clustered regularly interspaced short palindromic repeats/CRISPR-associated) system for genome modification in the amphibian Xenopus tropicalis. As a model experiment, targeted mutations of the tyrosinase gene were verified, showing the expected albinism phenotype in injected embryos. We further tested this technology by interrupting the six3 gene, which is required for proper eye and brain formation. Expected eye and brain phenotypes were observed when inducing mutations in the six3 coding regions, as well as when deleting the gene promoter by dual targeting. We describe here a standardized protocol for genome editing using this system. This simple and fast method to edit the genome provides a powerful new reverse genetics tool for Xenopus researchers.

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Year:  2013        PMID: 24123613      PMCID: PMC3947545          DOI: 10.1002/dvg.22720

Source DB:  PubMed          Journal:  Genesis        ISSN: 1526-954X            Impact factor:   2.487


  23 in total

1.  Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).

Authors:  Yong Lei; Xiaogang Guo; Yun Liu; Yang Cao; Yi Deng; Xiongfeng Chen; Christopher H K Cheng; Igor B Dawid; Yonglong Chen; Hui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

Review 2.  Xenopus research: metamorphosed by genetics and genomics.

Authors:  Richard M Harland; Robert M Grainger
Journal:  Trends Genet       Date:  2011-10-01       Impact factor: 11.639

3.  Simple, fast, tissue-specific bacterial artificial chromosome transgenesis in Xenopus.

Authors:  Margaret B Fish; Takuya Nakayama; Robert M Grainger
Journal:  Genesis       Date:  2011-12-27       Impact factor: 2.487

4.  Haploinsufficiency of Six3 fails to activate Sonic hedgehog expression in the ventral forebrain and causes holoprosencephaly.

Authors:  Xin Geng; Christina Speirs; Oleg Lagutin; Adi Inbal; Wei Liu; Lilianna Solnica-Krezel; Yongsu Jeong; Douglas J Epstein; Guillermo Oliver
Journal:  Dev Cell       Date:  2008-08       Impact factor: 12.270

5.  High-throughput transgenesis in Xenopus using I-SceI meganuclease.

Authors:  Hajime Ogino; William B McConnell; Robert M Grainger
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  Six3 repression of Wnt signaling in the anterior neuroectoderm is essential for vertebrate forebrain development.

Authors:  Oleg V Lagutin; Changqi C Zhu; Daisuke Kobayashi; Jacek Topczewski; Kenji Shimamura; Luis Puelles; Helen R C Russell; Peter J McKinnon; Lilianna Solnica-Krezel; Guillermo Oliver
Journal:  Genes Dev       Date:  2003-02-01       Impact factor: 11.361

7.  Targeted gene disruption in the Xenopus tropicalis genome using designed TALE nucleases.

Authors:  Keisuke Nakajima; Yuya Nakai; Morihiro Okada; Yoshio Yaoita
Journal:  Zoolog Sci       Date:  2013-06       Impact factor: 0.931

8.  Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system.

Authors:  Andrew R Bassett; Charlotte Tibbit; Chris P Ponting; Ji-Long Liu
Journal:  Cell Rep       Date:  2013-07-01       Impact factor: 9.423

9.  Genome editing with RNA-guided Cas9 nuclease in zebrafish embryos.

Authors:  Nannan Chang; Changhong Sun; Lu Gao; Dan Zhu; Xiufei Xu; Xiaojun Zhu; Jing-Wei Xiong; Jianzhong Jeff Xi
Journal:  Cell Res       Date:  2013-03-26       Impact factor: 25.617

10.  Heritable genome editing in C. elegans via a CRISPR-Cas9 system.

Authors:  Ari E Friedland; Yonatan B Tzur; Kevin M Esvelt; Monica P Colaiácovo; George M Church; John A Calarco
Journal:  Nat Methods       Date:  2013-06-30       Impact factor: 28.547

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  115 in total

1.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients.

Authors:  Takuya Nakayama; Marilyn Fisher; Keisuke Nakajima; Akinleye O Odeleye; Keith B Zimmerman; Margaret B Fish; Yoshio Yaoita; Jena L Chojnowski; James D Lauderdale; Peter A Netland; Robert M Grainger
Journal:  Dev Biol       Date:  2015-02-25       Impact factor: 3.582

3.  Desmoplakin is required for epidermal integrity and morphogenesis in the Xenopus laevis embryo.

Authors:  Navaneetha Krishnan Bharathan; Amanda J G Dickinson
Journal:  Dev Biol       Date:  2019-03-29       Impact factor: 3.582

Review 4.  Cas9-based tools for targeted genome editing and transcriptional control.

Authors:  Tao Xu; Yongchao Li; Joy D Van Nostrand; Zhili He; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2014-01-03       Impact factor: 4.792

5.  An interspecies heart-to-heart: Using Xenopus to uncover the genetic basis of congenital heart disease.

Authors:  Alexandra MacColl Garfinkel; Mustafa K Khokha
Journal:  Curr Pathobiol Rep       Date:  2017-05-06

Review 6.  CRISPR-Cas systems for editing, regulating and targeting genomes.

Authors:  Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-03-02       Impact factor: 54.908

7.  Distinct cis-acting regions control six6 expression during eye field and optic cup stages of eye formation.

Authors:  Kelley L Ledford; Reyna I Martinez-De Luna; Matthew A Theisen; Karisa D Rawlins; Andrea S Viczian; Michael E Zuber
Journal:  Dev Biol       Date:  2017-04-21       Impact factor: 3.582

8.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
Journal:  Aquat Toxicol       Date:  2014-11-26       Impact factor: 4.964

Review 9.  CRISPR-based technologies: prokaryotic defense weapons repurposed.

Authors:  Rebecca M Terns; Michael P Terns
Journal:  Trends Genet       Date:  2014-02-18       Impact factor: 11.639

10.  Functional Studies of Transcriptional Cofactors via Microinjection-Mediated Gene Editing in Xenopus.

Authors:  Yuki Shibata; Lingyu Bao; Liezhen Fu; Bingyin Shi; Yun-Bo Shi
Journal:  Methods Mol Biol       Date:  2019
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