Literature DB >> 24013819

Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein.

Shenlin Wang1, Rachel A Munro, Lichi Shi, Izuru Kawamura, Takashi Okitsu, Akimori Wada, So-Young Kim, Kwang-Hwan Jung, Leonid S Brown, Vladimir Ladizhansky.   

Abstract

Determination of structure of integral membrane proteins, especially in their native environment, is a formidable challenge in structural biology. Here we demonstrate that magic angle spinning solid-state NMR spectroscopy can be used to determine structures of membrane proteins reconstituted in synthetic lipids, an environment similar to the natural membrane. We combined a large number of experimentally determined interatomic distances and local torsional restraints to solve the structure of an oligomeric membrane protein of common seven-helical fold, Anabaena sensory rhodopsin (ASR). We determined the atomic resolution detail of the oligomerization interface of the ASR trimer, and the arrangement of helices, side chains and the retinal cofactor in the monomer.

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Year:  2013        PMID: 24013819     DOI: 10.1038/nmeth.2635

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  57 in total

1.  Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin.

Authors:  E Tajkhorshid; J Baudry; K Schulten; S Suhai
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

2.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

3.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

4.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

5.  Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Authors:  Shakeel Ahmad Shahid; Benjamin Bardiaux; W Trent Franks; Ludwig Krabben; Michael Habeck; Barth-Jan van Rossum; Dirk Linke
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Solid-state NMR ¹³C and ¹⁵N resonance assignments of a seven-transmembrane helical protein Anabaena Sensory Rhodopsin.

Authors:  Shenlin Wang; Lichi Shi; Takashi Okitsu; Akimori Wada; Leonid S Brown; Vladimir Ladizhansky
Journal:  Biomol NMR Assign       Date:  2012-09-16       Impact factor: 0.746

8.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

9.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  86 in total

1.  Enlightening the photoactive site of channelrhodopsin-2 by DNP-enhanced solid-state NMR spectroscopy.

Authors:  Johanna Becker-Baldus; Christian Bamann; Krishna Saxena; Henrik Gustmann; Lynda J Brown; Richard C D Brown; Christian Reiter; Ernst Bamberg; Josef Wachtveitl; Harald Schwalbe; Clemens Glaubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

2.  Proton detection for signal enhancement in solid-state NMR experiments on mobile species in membrane proteins.

Authors:  Meaghan E Ward; Emily Ritz; Mumdooh A M Ahmed; Vladimir V Bamm; George Harauz; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2015-10-22       Impact factor: 2.835

3.  High-resolution paramagnetically enhanced solid-state NMR spectroscopy of membrane proteins at fast magic angle spinning.

Authors:  Meaghan E Ward; Shenlin Wang; Sridevi Krishnamurthy; Howard Hutchins; Michael Fey; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2013-12-13       Impact factor: 2.835

4.  Proton-detected 2D radio frequency driven recoupling solid-state NMR studies on micelle-associated cytochrome-b(5).

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Kazutoshi Yamamoto; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-03-01       Impact factor: 2.229

5.  NMR as a tool to investigate the structure, dynamics and function of membrane proteins.

Authors:  Binyong Liang; Lukas K Tamm
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

6.  Toward high-resolution computational design of the structure and function of helical membrane proteins.

Authors:  Patrick Barth; Alessandro Senes
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

7.  The ABC exporter MsbA probed by solid state NMR – challenges and opportunities.

Authors:  Hundeep Kaur; Andrea Lakatos; Roberta Spadaccini; Ramona Vogel; Christian Hoffmann; Johanna Becker-Baldus; Olivier Ouari; Paul Tordo; Hassane Mchaourab; Clemens Glaubitz
Journal:  Biol Chem       Date:  2015-09       Impact factor: 3.915

Review 8.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

9.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

10.  Detergent-free extraction, reconstitution and characterization of membrane-anchored cytochrome-b5 in native lipids.

Authors:  Bankala Krishnarjuna; Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2020-05-28       Impact factor: 6.222

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