Literature DB >> 26494649

Proton detection for signal enhancement in solid-state NMR experiments on mobile species in membrane proteins.

Meaghan E Ward1,2, Emily Ritz1,2, Mumdooh A M Ahmed1,2,3,4, Vladimir V Bamm2,3, George Harauz2,3, Leonid S Brown1,2, Vladimir Ladizhansky5,6.   

Abstract

Direct proton detection is becoming an increasingly popular method for enhancing sensitivity in solid-state nuclear magnetic resonance spectroscopy. Generally, these experiments require extensive deuteration of the protein, fast magic angle spinning (MAS), or a combination of both. Here, we implement direct proton detection to selectively observe the mobile entities in fully-protonated membrane proteins at moderate MAS frequencies. We demonstrate this method on two proteins that exhibit different motional regimes. Myelin basic protein is an intrinsically-disordered, peripherally membrane-associated protein that is highly flexible, whereas Anabaena sensory rhodopsin is composed of seven rigid transmembrane α-helices connected by mobile loop regions. In both cases, we observe narrow proton linewidths and, on average, a 10× increase in sensitivity in 2D insensitive nuclear enhancement of polarization transfer-based HSQC experiments when proton detection is compared to carbon detection. We further show that our proton-detected experiments can be easily extended to three dimensions and used to build complete amino acid systems, including sidechain protons, and obtain inter-residue correlations. Additionally, we detect signals which do not correspond to amino acids, but rather to lipids and/or carbohydrates which interact strongly with membrane proteins.

Entities:  

Keywords:  INEPT; J-couplings; Magic angle spinning (MAS); Membrane proteins; Proton detection; Solid-state nuclear magnetic resonance (SSNMR)

Mesh:

Substances:

Year:  2015        PMID: 26494649     DOI: 10.1007/s10858-015-9997-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  90 in total

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Journal:  J Mol Biol       Date:  2010-11-19       Impact factor: 5.469

3.  Protein conformational exchange measured by 1H R1ρ relaxation dispersion of methyl groups.

Authors:  Ulrich Weininger; Annica T Blissing; Janosch Hennig; Alexandra Ahlner; Zhihong Liu; Hans J Vogel; Mikael Akke; Patrik Lundström
Journal:  J Biomol NMR       Date:  2013-08-02       Impact factor: 2.835

4.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

5.  Direct evidence for the cooperative unfolding of cytochrome c in lipid membranes from H-(2)H exchange kinetics.

Authors:  T J Pinheiro; H Cheng; S H Seeholzer; H Roder
Journal:  J Mol Biol       Date:  2000-11-03       Impact factor: 5.469

6.  Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin.

Authors:  Meaghan E Ward; Lichi Shi; Evelyn Lake; Sridevi Krishnamurthy; Howard Hutchins; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

7.  Molecular dynamics of proteorhodopsin in lipid bilayers by solid-state NMR.

Authors:  Jun Yang; Lubica Aslimovska; Clemens Glaubitz
Journal:  J Am Chem Soc       Date:  2011-03-14       Impact factor: 15.419

Review 8.  The classic basic protein of myelin--conserved structural motifs and the dynamic molecular barcode involved in membrane adhesion and protein-protein interactions.

Authors:  George Harauz; David S Libich
Journal:  Curr Protein Pept Sci       Date:  2009-06       Impact factor: 3.272

9.  Solid-state NMR spectroscopy of 18.5 kDa myelin basic protein reconstituted with lipid vesicles: spectroscopic characterisation and spectral assignments of solvent-exposed protein fragments.

Authors:  Ligang Zhong; Vladimir V Bamm; Mumdooh A M Ahmed; George Harauz; Vladimir Ladizhansky
Journal:  Biochim Biophys Acta       Date:  2007-08-24

10.  Solid-state NMR ¹³C and ¹⁵N resonance assignments of a seven-transmembrane helical protein Anabaena Sensory Rhodopsin.

Authors:  Shenlin Wang; Lichi Shi; Takashi Okitsu; Akimori Wada; Leonid S Brown; Vladimir Ladizhansky
Journal:  Biomol NMR Assign       Date:  2012-09-16       Impact factor: 0.746

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  8 in total

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Review 2.  Applications of NMR to membrane proteins.

Authors:  Stanley J Opella; Francesca M Marassi
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Review 3.  Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR.

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4.  Interaction of Monomeric Interleukin-8 with CXCR1 Mapped by Proton-Detected Fast MAS Solid-State NMR.

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Journal:  Biophys J       Date:  2017-12-19       Impact factor: 4.033

Review 5.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

Review 6.  From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.

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7.  Site-Specific Studies of Nucleosome Interactions by Solid-State NMR Spectroscopy.

Authors:  ShengQi Xiang; Ulric B le Paige; Velten Horn; Klaartje Houben; Marc Baldus; Hugo van Ingen
Journal:  Angew Chem Int Ed Engl       Date:  2018-03-13       Impact factor: 15.336

8.  Direct observation of dynamic protein interactions involving human microtubules using solid-state NMR spectroscopy.

Authors:  Yanzhang Luo; ShengQi Xiang; Peter Jan Hooikaas; Laura van Bezouwen; A S Jijumon; Carsten Janke; Friedrich Förster; Anna Akhmanova; Marc Baldus
Journal:  Nat Commun       Date:  2020-01-02       Impact factor: 14.919

  8 in total

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