Literature DB >> 24003214

The discovery of histone demethylases.

Yujiang Geno Shi1, Yuichi Tsukada.   

Abstract

Histone methylation is a key element of the eukaryotic epigenome. Since the discovery of the first histone demethylase (HDM) in 2004, more than 20 demethylases have been identified and characterized. They belong to either the LSD family or the JmjC family, demonstrating the reversibility of all methylation states at almost all major histone lysine methylation sites. These findings ended decades of debate about the reversibility of histone methylation, representing a major breakthrough that shifts our understanding of epigenetic inheritance and regulation of genome function. Here, we summarize the discovery of HDMs and more recent advances, challenges, and future prospects of HDM research.

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Year:  2013        PMID: 24003214      PMCID: PMC3753710          DOI: 10.1101/cshperspect.a017947

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  8 in total

1.  Coordinated histone modifications mediated by a CtBP co-repressor complex.

Authors:  Yujiang Shi; Jun-ichi Sawada; Guangchao Sui; El Bachir Affar; Johnathan R Whetstine; Fei Lan; Hidesato Ogawa; Margaret Po-Shan Luke; Yoshihiro Nakatani; Yang Shi
Journal:  Nature       Date:  2003-04-17       Impact factor: 49.962

2.  AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli.

Authors:  Pål Ø Falnes; Rune F Johansen; Erling Seeberg
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

3.  Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells.

Authors:  Barna D Fodor; Stefan Kubicek; Masato Yonezawa; Roderick J O'Sullivan; Roopsha Sengupta; Laura Perez-Burgos; Susanne Opravil; Karl Mechtler; Gunnar Schotta; Thomas Jenuwein
Journal:  Genes Dev       Date:  2006-05-31       Impact factor: 11.361

4.  Histone demethylation by a family of JmjC domain-containing proteins.

Authors:  Yu-ichi Tsukada; Jia Fang; Hediye Erdjument-Bromage; Maria E Warren; Christoph H Borchers; Paul Tempst; Yi Zhang
Journal:  Nature       Date:  2005-12-18       Impact factor: 49.962

5.  The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3.

Authors:  Paul A C Cloos; Jesper Christensen; Karl Agger; Alessio Maiolica; Juri Rappsilber; Torben Antal; Klaus H Hansen; Kristian Helin
Journal:  Nature       Date:  2006-05-28       Impact factor: 49.962

6.  Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases.

Authors:  Johnathan R Whetstine; Amanda Nottke; Fei Lan; Maite Huarte; Sarit Smolikov; Zhongzhou Chen; Eric Spooner; En Li; Gongyi Zhang; Monica Colaiacovo; Yang Shi
Journal:  Cell       Date:  2006-04-06       Impact factor: 41.582

7.  Histone demethylation mediated by the nuclear amine oxidase homolog LSD1.

Authors:  Yujiang Shi; Fei Lan; Caitlin Matson; Peter Mulligan; Johnathan R Whetstine; Philip A Cole; Robert A Casero; Yang Shi
Journal:  Cell       Date:  2004-12-29       Impact factor: 41.582

8.  Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors:  Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

  8 in total
  41 in total

1.  Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.

Authors:  John R Horton; Clayton B Woodcock; Qin Chen; Xu Liu; Xing Zhang; John Shanks; Ganesha Rai; Bryan T Mott; Daniel J Jansen; Stephen C Kales; Mark J Henderson; Matthew Cyr; Katherine Pohida; Xin Hu; Pranav Shah; Xin Xu; Ajit Jadhav; David J Maloney; Matthew D Hall; Anton Simeonov; Haian Fu; Paula M Vertino; Xiaodong Cheng
Journal:  J Med Chem       Date:  2018-11-15       Impact factor: 7.446

Review 2.  The critical role of histone lysine demethylase KDM2B in cancer.

Authors:  Meina Yan; Xinxin Yang; Hui Wang; Qixiang Shao
Journal:  Am J Transl Res       Date:  2018-08-15       Impact factor: 4.060

Review 3.  The Mechanisms of Generation, Recognition, and Erasure of DNA 5-Methylcytosine and Thymine Oxidations.

Authors:  Hideharu Hashimoto; Xing Zhang; Paula M Vertino; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2015-07-07       Impact factor: 5.157

Review 4.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

Review 5.  Regulation of the Epigenome by Vitamin C.

Authors:  Juan I Young; Stephan Züchner; Gaofeng Wang
Journal:  Annu Rev Nutr       Date:  2015-05-06       Impact factor: 11.848

Review 6.  Toward development of epigenetic drugs for central nervous system disorders: Modulating neuroplasticity via H3K4 methylation.

Authors:  Emily L Ricq; Jacob M Hooker; Stephen J Haggarty
Journal:  Psychiatry Clin Neurosci       Date:  2016-09-07       Impact factor: 5.188

Review 7.  DNA damage response and repair pathway modulation by non-histone protein methylation: implications in neurodegeneration.

Authors:  Madhusoodanan Urulangodi; Abhishek Mohanty
Journal:  J Cell Commun Signal       Date:  2019-11-20       Impact factor: 5.782

8.  Insights into the Action of Inhibitor Enantiomers against Histone Lysine Demethylase 5A.

Authors:  John R Horton; Xu Liu; Lizhen Wu; Kai Zhang; John Shanks; Xing Zhang; Ganesha Rai; Bryan T Mott; Daniel J Jansen; Stephen C Kales; Mark J Henderson; Katherine Pohida; Yuhong Fang; Xin Hu; Ajit Jadhav; David J Maloney; Matthew D Hall; Anton Simeonov; Haian Fu; Paula M Vertino; Qin Yan; Xiaodong Cheng
Journal:  J Med Chem       Date:  2018-03-23       Impact factor: 7.446

Review 9.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

Review 10.  Structural and functional coordination of DNA and histone methylation.

Authors:  Xiaodong Cheng
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-08-01       Impact factor: 10.005

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