Literature DB >> 26492570

Metabolic Signaling to Chromatin.

Shelley L Berger1, Paolo Sassone-Corsi2.   

Abstract

There is a dynamic interplay between metabolic processes and gene regulation via the remodeling of chromatin. Most chromatin-modifying enzymes use cofactors, which are products of metabolic processes. This article explores the biosynthetic pathways of the cofactors nicotinamide adenine dinucleotide (NAD), acetyl coenzyme A (acetyl-CoA), S-adenosyl methionine (SAM), α-ketoglutarate, and flavin adenine dinucleotide (FAD), and their role in metabolically regulating chromatin processes. A more detailed look at the interaction between chromatin and the metabolic processes of circadian rhythms and aging is described as a paradigm for this emerging interdisciplinary field.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2016        PMID: 26492570      PMCID: PMC5088527          DOI: 10.1101/cshperspect.a019463

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  159 in total

1.  Sirtuins deacetylate and activate mammalian acetyl-CoA synthetases.

Authors:  William C Hallows; Susan Lee; John M Denu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-21       Impact factor: 11.205

2.  Methionine adenosyltransferase II serves as a transcriptional corepressor of Maf oncoprotein.

Authors:  Yasutake Katoh; Tsuyoshi Ikura; Yutaka Hoshikawa; Satoshi Tashiro; Takashi Ito; Mineto Ohta; Yohei Kera; Tetsuo Noda; Kazuhiko Igarashi
Journal:  Mol Cell       Date:  2011-03-04       Impact factor: 17.970

3.  Chromatin remodeling in the aging genome of Drosophila.

Authors:  Jason G Wood; Sara Hillenmeyer; Charles Lawrence; Chengyi Chang; Suzanne Hosier; Will Lightfoot; Eric Mukherjee; Nan Jiang; Christoph Schorl; Alexander S Brodsky; Nicola Neretti; Stephen L Helfand
Journal:  Aging Cell       Date:  2010-10-21       Impact factor: 9.304

4.  A novel role for high-mobility group a proteins in cellular senescence and heterochromatin formation.

Authors:  Masashi Narita; Masako Narita; Valery Krizhanovsky; Sabrina Nuñez; Agustin Chicas; Stephen A Hearn; Michael P Myers; Scott W Lowe
Journal:  Cell       Date:  2006-08-11       Impact factor: 41.582

5.  The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms.

Authors:  M Kaeberlein; M McVey; L Guarente
Journal:  Genes Dev       Date:  1999-10-01       Impact factor: 11.361

6.  SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production.

Authors:  Tadahiro Shimazu; Matthew D Hirschey; Lan Hua; Kristin E Dittenhafer-Reed; Bjoern Schwer; David B Lombard; Yu Li; Jakob Bunkenborg; Frederick W Alt; John M Denu; Matthew P Jacobson; Eric Verdin
Journal:  Cell Metab       Date:  2010-12-01       Impact factor: 27.287

7.  Quantitative analyses of cryptochrome-mBMAL1 interactions: mechanistic insights into the transcriptional regulation of the mammalian circadian clock.

Authors:  Anna Czarna; Helena Breitkreuz; Carsten C Mahrenholz; Julia Arens; Holger M Strauss; Eva Wolf
Journal:  J Biol Chem       Date:  2011-04-25       Impact factor: 5.157

8.  The sirtuin SIRT6 deacetylates H3 K56Ac in vivo to promote genomic stability.

Authors:  Bo Yang; Bernadette M M Zwaans; Mark Eckersdorff; David B Lombard
Journal:  Cell Cycle       Date:  2009-08-22       Impact factor: 4.534

9.  Cell cycle-dependent deacetylation of telomeric histone H3 lysine K56 by human SIRT6.

Authors:  Eriko Michishita; Ronald A McCord; Lisa D Boxer; Matthew F Barber; Tao Hong; Or Gozani; Katrin F Chua
Journal:  Cell Cycle       Date:  2009-08-26       Impact factor: 4.534

10.  Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Authors:  Gwendal Le Martelot; Donatella Canella; Laura Symul; Eugenia Migliavacca; Federica Gilardi; Robin Liechti; Olivier Martin; Keith Harshman; Mauro Delorenzi; Béatrice Desvergne; Winship Herr; Bart Deplancke; Ueli Schibler; Jacques Rougemont; Nicolas Guex; Nouria Hernandez; Felix Naef
Journal:  PLoS Biol       Date:  2012-11-27       Impact factor: 8.029

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  43 in total

1.  Five months of voluntary wheel running downregulates skeletal muscle LINE-1 gene expression in rats.

Authors:  Matthew A Romero; Petey W Mumford; Paul A Roberson; Shelby C Osburn; Hailey A Parry; Andreas N Kavazis; L Bruce Gladden; Tonia S Schwartz; Brent A Baker; Ryan G Toedebusch; Thomas E Childs; Frank W Booth; Michael D Roberts
Journal:  Am J Physiol Cell Physiol       Date:  2019-10-16       Impact factor: 4.249

2.  Kinetics and mechanisms of mitotic inheritance of DNA methylation and their roles in aging-associated methylome deterioration.

Authors:  Xuan Ming; Zhuqiang Zhang; Zhuoning Zou; Cong Lv; Qiang Dong; Qixiang He; Yangyang Yi; Yingfeng Li; Hailin Wang; Bing Zhu
Journal:  Cell Res       Date:  2020-06-24       Impact factor: 25.617

Review 3.  The role of epigenetics in renal ageing.

Authors:  Paul G Shiels; Dagmara McGuinness; Maria Eriksson; Jeroen P Kooman; Peter Stenvinkel
Journal:  Nat Rev Nephrol       Date:  2017-06-19       Impact factor: 28.314

Review 4.  Genomic imprinting in mammals.

Authors:  Denise P Barlow; Marisa S Bartolomei
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-02-01       Impact factor: 10.005

Review 5.  The Aging Epigenome.

Authors:  Lauren N Booth; Anne Brunet
Journal:  Mol Cell       Date:  2016-06-02       Impact factor: 17.970

Review 6.  Integrating Proteomics and Targeted Metabolomics to Understand Global Changes in Histone Modifications.

Authors:  Johayra Simithy; Simone Sidoli; Benjamin A Garcia
Journal:  Proteomics       Date:  2018-04-20       Impact factor: 3.984

7.  A computational method using the random walk with restart algorithm for identifying novel epigenetic factors.

Authors:  JiaRui Li; Lei Chen; ShaoPeng Wang; YuHang Zhang; XiangYin Kong; Tao Huang; Yu-Dong Cai
Journal:  Mol Genet Genomics       Date:  2017-09-20       Impact factor: 3.291

Review 8.  Epigenetic control of gene regulation during development and disease: A view from the retina.

Authors:  Ximena Corso-Díaz; Catherine Jaeger; Vijender Chaitankar; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2018-03-12       Impact factor: 21.198

Review 9.  X- and Y-Linked Chromatin-Modifying Genes as Regulators of Sex-Specific Cancer Incidence and Prognosis.

Authors:  Rossella Tricarico; Emmanuelle Nicolas; Michael J Hall; Erica A Golemis
Journal:  Clin Cancer Res       Date:  2020-07-30       Impact factor: 12.531

Review 10.  Epigenetic Determinants of Cancer.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

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