Literature DB >> 25085914

Structural and functional coordination of DNA and histone methylation.

Xiaodong Cheng1.   

Abstract

One of the most fundamental questions in the control of gene expression in mammals is how epigenetic methylation patterns of DNA and histones are established, erased, and recognized. This central process in controlling gene expression includes coordinated covalent modifications of DNA and its associated histones. This article focuses on structural aspects of enzymatic activities of histone (arginine and lysine) methylation and demethylation and functional links between the methylation status of the DNA and histones. An interconnected network of methyltransferases, demethylases, and accessory proteins is responsible for changing or maintaining the modification status of specific regions of chromatin.
Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2014        PMID: 25085914      PMCID: PMC4107986          DOI: 10.1101/cshperspect.a018747

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  176 in total

1.  Meiotic and epigenetic defects in Dnmt3L-knockout mouse spermatogenesis.

Authors:  Kylie E Webster; Moira K O'Bryan; Stephen Fletcher; Pauline E Crewther; Ulla Aapola; Jeff Craig; Dion K Harrison; Hnin Aung; Nawapen Phutikanit; Robert Lyle; Sarah J Meachem; Stylianos E Antonarakis; David M de Kretser; Mark P Hedger; Pärt Peterson; Bernard J Carroll; Hamish S Scott
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

2.  In vitro and in vivo analyses of a Phe/Tyr switch controlling product specificity of histone lysine methyltransferases.

Authors:  Robert E Collins; Makoto Tachibana; Hisashi Tamaru; Kristina M Smith; Da Jia; Xing Zhang; Eric U Selker; Yoichi Shinkai; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2004-12-06       Impact factor: 5.157

Review 3.  Eukaryotic cytosine methyltransferases.

Authors:  Mary Grace Goll; Timothy H Bestor
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

Review 4.  Structural and sequence motifs of protein (histone) methylation enzymes.

Authors:  Xiaodong Cheng; Robert E Collins; Xing Zhang
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

5.  Methylation: lost in hydroxylation?

Authors:  Sarah C Trewick; Paul J McLaughlin; Robin C Allshire
Journal:  EMBO Rep       Date:  2005-04       Impact factor: 8.807

6.  Structural and functional analysis of SET8, a histone H4 Lys-20 methyltransferase.

Authors:  Jean-François Couture; Evys Collazo; Joseph S Brunzelle; Raymond C Trievel
Journal:  Genes Dev       Date:  2005-06-02       Impact factor: 11.361

7.  hDOT1L links histone methylation to leukemogenesis.

Authors:  Yuki Okada; Qin Feng; Yihui Lin; Qi Jiang; Yaqiang Li; Vernon M Coffield; Lishan Su; Guoliang Xu; Yi Zhang
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

8.  PRMT7, a new protein arginine methyltransferase that synthesizes symmetric dimethylarginine.

Authors:  Jin-Hyung Lee; Jeffry R Cook; Zhi-Hong Yang; Olga Mirochnitchenko; Samuel I Gunderson; Arthur M Felix; Nicole Herth; Ralf Hoffmann; Sidney Pestka
Journal:  J Biol Chem       Date:  2004-10-19       Impact factor: 5.157

9.  LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription.

Authors:  Eric Metzger; Melanie Wissmann; Na Yin; Judith M Müller; Robert Schneider; Antoine H F M Peters; Thomas Günther; Reinhard Buettner; Roland Schüle
Journal:  Nature       Date:  2005-08-03       Impact factor: 49.962

10.  Specificity and mechanism of the histone methyltransferase Pr-Set7.

Authors:  Bing Xiao; Chun Jing; Geoff Kelly; Philip A Walker; Frederick W Muskett; Thomas A Frenkiel; Stephen R Martin; Kavitha Sarma; Danny Reinberg; Steven J Gamblin; Jonathan R Wilson
Journal:  Genes Dev       Date:  2005-06-02       Impact factor: 11.361

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  45 in total

Review 1.  DNA methylation pathways and their crosstalk with histone methylation.

Authors:  Jiamu Du; Lianna M Johnson; Steven E Jacobsen; Dinshaw J Patel
Journal:  Nat Rev Mol Cell Biol       Date:  2015-09       Impact factor: 94.444

2.  Epigenetics. Restricted epigenetic inheritance of H3K9 methylation.

Authors:  Pauline N C B Audergon; Sandra Catania; Alexander Kagansky; Pin Tong; Manu Shukla; Alison L Pidoux; Robin C Allshire
Journal:  Science       Date:  2015-04-03       Impact factor: 47.728

Review 3.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

Review 4.  Epigenetics of ciliates.

Authors:  Douglas L Chalker; Eric Meyer; Kazufumi Mochizuki
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

Review 5.  CpG island chromatin is shaped by recruitment of ZF-CxxC proteins.

Authors:  Neil P Blackledge; John P Thomson; Peter J Skene
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

Review 6.  Epigenetic regulation in plants.

Authors:  Craig S Pikaard; Ortrun Mittelsten Scheid
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-12-01       Impact factor: 10.005

Review 7.  Transcriptional silencing by polycomb-group proteins.

Authors:  Ueli Grossniklaus; Renato Paro
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-11-03       Impact factor: 10.005

Review 8.  Dosage compensation in mammals.

Authors:  Neil Brockdorff; Bryan M Turner
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-03-02       Impact factor: 10.005

Review 9.  Epigenetic Determinants of Cancer.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-09-01       Impact factor: 10.005

Review 10.  Metabolic Signaling to Chromatin.

Authors:  Shelley L Berger; Paolo Sassone-Corsi
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

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