Literature DB >> 23868317

Chemical reporters for biological discovery.

Markus Grammel1, Howard C Hang.   

Abstract

Functional tools are needed to understand complex biological systems. Here we review how chemical reporters in conjunction with bioorthogonal labeling methods can be used to image and retrieve nucleic acids, proteins, glycans, lipids and other metabolites in vitro, in cells as well as in whole organisms. By tagging these biomolecules, researchers can now monitor their dynamics in living systems and discover specific substrates of cellular pathways. These advances in chemical biology are thus providing important tools to characterize biological pathways and are poised to facilitate our understanding of human diseases.

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Year:  2013        PMID: 23868317      PMCID: PMC3866016          DOI: 10.1038/nchembio.1296

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  99 in total

1.  Proteomic analysis of fatty-acylated proteins in mammalian cells with chemical reporters reveals S-acylation of histone H3 variants.

Authors:  John P Wilson; Anuradha S Raghavan; Yu-Ying Yang; Guillaume Charron; Howard C Hang
Journal:  Mol Cell Proteomics       Date:  2010-11-14       Impact factor: 5.911

Review 2.  A newly discovered post-translational modification--the acetylation of serine and threonine residues.

Authors:  Sohini Mukherjee; Yi-Heng Hao; Kim Orth
Journal:  Trends Biochem Sci       Date:  2007-04-06       Impact factor: 13.807

3.  The engineering of bacteria bearing azido-pseudaminic acid-modified flagella.

Authors:  Feng Liu; Annie J Aubry; Ian C Schoenhofen; Susan M Logan; Martin E Tanner
Journal:  Chembiochem       Date:  2009-05-25       Impact factor: 3.164

4.  Bioorthogonal chemical tagging of protein cholesterylation in living cells.

Authors:  William P Heal; Biljana Jovanovic; Sara Bessin; Megan H Wright; Anthony I Magee; Edward W Tate
Journal:  Chem Commun (Camb)       Date:  2011-01-11       Impact factor: 6.222

5.  Peroxide-dependent sulfenylation of the EGFR catalytic site enhances kinase activity.

Authors:  Candice E Paulsen; Thu H Truong; Francisco J Garcia; Arne Homann; Vinayak Gupta; Stephen E Leonard; Kate S Carroll
Journal:  Nat Chem Biol       Date:  2011-12-11       Impact factor: 15.040

6.  Metabolic click-labeling with a fucose analog reveals pectin delivery, architecture, and dynamics in Arabidopsis cell walls.

Authors:  Charles T Anderson; Ian S Wallace; Chris R Somerville
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

7.  AMPylation of Rho GTPases by Vibrio VopS disrupts effector binding and downstream signaling.

Authors:  Melanie L Yarbrough; Yan Li; Lisa N Kinch; Nick V Grishin; Haydn L Ball; Kim Orth
Journal:  Science       Date:  2008-11-27       Impact factor: 47.728

8.  Genetic Encoding of bicyclononynes and trans-cyclooctenes for site-specific protein labeling in vitro and in live mammalian cells via rapid fluorogenic Diels-Alder reactions.

Authors:  Kathrin Lang; Lloyd Davis; Stephen Wallace; Mohan Mahesh; Daniel J Cox; Melissa L Blackman; Joseph M Fox; Jason W Chin
Journal:  J Am Chem Soc       Date:  2012-06-13       Impact factor: 15.419

9.  Expanding the genetic code of an animal.

Authors:  Sebastian Greiss; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-08-22       Impact factor: 15.419

Review 10.  Chemical contrast for imaging living systems: molecular vibrations drive CARS microscopy.

Authors:  John Paul Pezacki; Jessie A Blake; Dana C Danielson; David C Kennedy; Rodney K Lyn; Ragunath Singaravelu
Journal:  Nat Chem Biol       Date:  2011-03       Impact factor: 15.040

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  113 in total

1.  Extracellular Toxoplasma gondii tachyzoites metabolize and incorporate unnatural sugars into cellular proteins.

Authors:  Lidia A Nazarova; Roxanna J Ochoa; Krysten A Jones; Naomi S Morrissette; Jennifer A Prescher
Journal:  Microbes Infect       Date:  2015-12-11       Impact factor: 2.700

2.  A Chemoenzymatic Strategy for Imaging Cellular Phosphatidic Acid Synthesis.

Authors:  Timothy W Bumpus; Jeremy M Baskin
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-10       Impact factor: 15.336

Review 3.  Chemical reporters for exploring protein acylation.

Authors:  Emmanuelle Thinon; Howard C Hang
Journal:  Biochem Soc Trans       Date:  2015-04       Impact factor: 5.407

4.  Tracking glycosylation in live cells using FTIR spectroscopy.

Authors:  Joshua Phelan; Ali Altharawi; K L Andrew Chan
Journal:  Talanta       Date:  2020-01-13       Impact factor: 6.057

Review 5.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

Review 6.  Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface.

Authors:  M Sloan Siegrist; Benjamin M Swarts; Douglas M Fox; Shion An Lim; Carolyn R Bertozzi
Journal:  FEMS Microbiol Rev       Date:  2015-01-23       Impact factor: 16.408

7.  Live-cell vibrational imaging of choline metabolites by stimulated Raman scattering coupled with isotope-based metabolic labeling.

Authors:  Fanghao Hu; Lu Wei; Chaogu Zheng; Yihui Shen; Wei Min
Journal:  Analyst       Date:  2014-05-21       Impact factor: 4.616

Review 8.  Chemistry-enabled methods for the visualization of cell-surface glycoproteins in Metazoans.

Authors:  Kelly N Chuh; Matthew R Pratt
Journal:  Glycoconj J       Date:  2015-04-28       Impact factor: 2.916

9.  A fluorogenic screening platform enables directed evolution of an alkyne biosynthetic tool.

Authors:  Xuejun Zhu; Peyton Shieh; Michael Su; Carolyn R Bertozzi; Wenjun Zhang
Journal:  Chem Commun (Camb)       Date:  2016-08-25       Impact factor: 6.222

Review 10.  Proteomic analysis of fatty-acylated proteins.

Authors:  Tao Peng; Emmanuelle Thinon; Howard C Hang
Journal:  Curr Opin Chem Biol       Date:  2015-12-02       Impact factor: 8.822

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