Literature DB >> 25849926

Chemical reporters for exploring protein acylation.

Emmanuelle Thinon1, Howard C Hang1.   

Abstract

Proteins are acylated by a variety of metabolites that regulates many important cellular pathways in all kingdoms of life. Acyl groups in cells can vary in structure from the smallest unit, acetate, to modified long-chain fatty acids, all of which can be activated and covalently attached to diverse amino acid side chains and consequently modulate protein function. For example, acetylation of Lys residues can alter the charge state of proteins and generate new recognition elements for protein-protein interactions. Alternatively, long-chain fatty-acylation targets proteins to membranes and enables spatial control of cell signalling. To facilitate the analysis of protein acylation in biology, acyl analogues bearing alkyne or azide tags have been developed that enable fluorescent imaging and proteomic profiling of modified proteins using bioorthogonal ligation methods. Herein, we summarize the currently available acylation chemical reporters and highlight their utility to discover and quantify the roles of protein acylation in biology.

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Year:  2015        PMID: 25849926      PMCID: PMC4529279          DOI: 10.1042/BST20150004

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  57 in total

1.  Proteomic analysis of fatty-acylated proteins in mammalian cells with chemical reporters reveals S-acylation of histone H3 variants.

Authors:  John P Wilson; Anuradha S Raghavan; Yu-Ying Yang; Guillaume Charron; Howard C Hang
Journal:  Mol Cell Proteomics       Date:  2010-11-14       Impact factor: 5.911

Review 2.  Chemical approaches for the detection and synthesis of acetylated proteins.

Authors:  Yu-Ying Yang; Howard C Hang
Journal:  Chembiochem       Date:  2011-01-11       Impact factor: 3.164

Review 3.  DHHC palmitoyl transferases: substrate interactions and (patho)physiology.

Authors:  Jennifer Greaves; Luke H Chamberlain
Journal:  Trends Biochem Sci       Date:  2011-03-08       Impact factor: 13.807

Review 4.  Exploring protein lipidation with chemical biology.

Authors:  Howard C Hang; Maurine E Linder
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

5.  Activation of the protein deacetylase SIRT6 by long-chain fatty acids and widespread deacylation by mammalian sirtuins.

Authors:  Jessica L Feldman; Josue Baeza; John M Denu
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

6.  Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features.

Authors:  Willy V Bienvenut; David Sumpton; Aude Martinez; Sergio Lilla; Christelle Espagne; Thierry Meinnel; Carmela Giglione
Journal:  Mol Cell Proteomics       Date:  2012-01-05       Impact factor: 5.911

7.  Palmitoylome profiling reveals S-palmitoylation-dependent antiviral activity of IFITM3.

Authors:  Jacob S Yount; Bruno Moltedo; Yu-Ying Yang; Guillaume Charron; Thomas M Moran; Carolina B López; Howard C Hang
Journal:  Nat Chem Biol       Date:  2010-07-04       Impact factor: 15.040

8.  Identification of CKAP4/p63 as a major substrate of the palmitoyl acyltransferase DHHC2, a putative tumor suppressor, using a novel proteomics method.

Authors:  Jun Zhang; Sonia L Planey; Carolina Ceballos; Stanley M Stevens; Susan K Keay; David A Zacharias
Journal:  Mol Cell Proteomics       Date:  2008-02-22       Impact factor: 5.911

Review 9.  Fat chance! Getting a grip on a slippery modification.

Authors:  Christopher T M B Tom; Brent R Martin
Journal:  ACS Chem Biol       Date:  2012-12-18       Impact factor: 5.100

10.  Direct detection of S-palmitoylation by mass spectrometry.

Authors:  Yuhuan Ji; Nancy Leymarie; Dagmar J Haeussler; Marcus M Bachschmid; Catherine E Costello; Cheng Lin
Journal:  Anal Chem       Date:  2013-12-06       Impact factor: 6.986

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  14 in total

1.  Bioorthogonal Chemical Reporters for Monitoring Unsaturated Fatty-Acylated Proteins.

Authors:  Emmanuelle Thinon; Avital Percher; Howard C Hang
Journal:  Chembiochem       Date:  2016-07-29       Impact factor: 3.164

2.  Selective Enrichment and Direct Analysis of Protein S-Palmitoylation Sites.

Authors:  Emmanuelle Thinon; Joseph P Fernandez; Henrik Molina; Howard C Hang
Journal:  J Proteome Res       Date:  2018-04-06       Impact factor: 4.466

Review 3.  Proteomic analysis of fatty-acylated proteins.

Authors:  Tao Peng; Emmanuelle Thinon; Howard C Hang
Journal:  Curr Opin Chem Biol       Date:  2015-12-02       Impact factor: 8.822

4.  Membrane Disruption by Very Long Chain Fatty Acids during Necroptosis.

Authors:  Laura R Parisi; Shahin Sowlati-Hashjin; Ilyas A Berhane; Samuel L Galster; Kevin A Carter; Jonathan F Lovell; Sherry R Chemler; Mikko Karttunen; G Ekin Atilla-Gokcumen
Journal:  ACS Chem Biol       Date:  2019-09-20       Impact factor: 5.100

5.  Integration of Bioorthogonal Probes and Q-FRET for the Detection of Histone Acetyltransferase Activity.

Authors:  Zhen Han; Yepeng Luan; Yujun George Zheng
Journal:  Chembiochem       Date:  2015-10-26       Impact factor: 3.164

6.  Lysine malonylation and propionylation are prevalent in human lens proteins.

Authors:  Rooban B Nahomi; Sandip K Nandi; Stefan Rakete; Cole Michel; Kristofer S Fritz; Ram H Nagaraj
Journal:  Exp Eye Res       Date:  2019-10-31       Impact factor: 3.467

Review 7.  Chemical approaches for investigating site-specific protein S-fatty acylation.

Authors:  Emma H Garst; Tandrila Das; Howard C Hang
Journal:  Curr Opin Chem Biol       Date:  2021-07-29       Impact factor: 8.822

Review 8.  A Not-So-Ancient Grease History: Click Chemistry and Protein Lipid Modifications.

Authors:  Kiall F Suazo; Keun-Young Park; Mark D Distefano
Journal:  Chem Rev       Date:  2021-04-06       Impact factor: 72.087

Review 9.  Protein S-palmitoylation in cellular differentiation.

Authors:  Mingzi M Zhang; Howard C Hang
Journal:  Biochem Soc Trans       Date:  2017-02-08       Impact factor: 5.407

10.  Detecting N-myristoylation and S-acylation of host and pathogen proteins in plants using click chemistry.

Authors:  Patrick C Boyle; Simon Schwizer; Sarah R Hind; Christine M Kraus; Susana De la Torre Diaz; Bin He; Gregory B Martin
Journal:  Plant Methods       Date:  2016-08-03       Impact factor: 4.993

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