Literature DB >> 23851459

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A.

Melanie Weisser1, Felix Voigts-Hoffmann, Julius Rabl, Marc Leibundgut, Nenad Ban.   

Abstract

Eukaryotic translation initiation factors (eIFs) 1A and 1 are central players in the complex process of start-codon recognition. To improve mechanistic understanding of this process, we determined the crystal structure of the 40S ribosomal subunit in complex with eIF1A and eIF1 from Tetrahymena thermophila at a resolution of 3.7 Å. It reveals the positions of the two factors on the 40S and the conformational changes that accompany their binding.

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Year:  2013        PMID: 23851459     DOI: 10.1038/nsmb.2622

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  33 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

2.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

3.  Regulatory elements in eIF1A control the fidelity of start codon selection by modulating tRNA(i)(Met) binding to the ribosome.

Authors:  Adesh K Saini; Jagpreet S Nanda; Jon R Lorsch; Alan G Hinnebusch
Journal:  Genes Dev       Date:  2010-01-01       Impact factor: 11.361

4.  The eIF1A C-terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo.

Authors:  Christie A Fekete; Drew J Applefield; Stephen A Blakely; Nikolay Shirokikh; Tatyana Pestova; Jon R Lorsch; Alan G Hinnebusch
Journal:  EMBO J       Date:  2005-09-29       Impact factor: 11.598

5.  The eIF1A solution structure reveals a large RNA-binding surface important for scanning function.

Authors:  J L Battiste; T V Pestova; C U Hellen; G Wagner
Journal:  Mol Cell       Date:  2000-01       Impact factor: 17.970

6.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

7.  Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing.

Authors:  Yingpu Yu; Assen Marintchev; Victoria G Kolupaeva; Anett Unbehaun; Tatyana Veryasova; Shao-Chiang Lai; Peng Hong; Gerhard Wagner; Christopher U T Hellen; Tatyana V Pestova
Journal:  Nucleic Acids Res       Date:  2009-06-26       Impact factor: 16.971

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA.

Authors:  Daoming Qin; Kurt Fredrick
Journal:  Mol Microbiol       Date:  2009-01-16       Impact factor: 3.501

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  38 in total

Review 1.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

2.  Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex.

Authors:  Christopher H S Aylett; Daniel Boehringer; Jan P Erzberger; Tanja Schaefer; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

3.  A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity.

Authors:  Ilya A Osterman; Sergey A Evfratov; Margarita M Dzama; Philipp I Pletnev; Sergey I Kovalchuk; Ivan O Butenko; Olga V Pobeguts; Anna Ya Golovina; Vadim M Govorun; Alexey A Bogdanov; Petr V Sergiev; Olga A Dontsova
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 4.  Eukaryotic aspects of translation initiation brought into focus.

Authors:  Christopher H S Aylett; Nenad Ban
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

5.  Role of aIF1 in Pyrococcus abyssi translation initiation.

Authors:  Auriane Monestier; Christine Lazennec-Schurdevin; Pierre-Damien Coureux; Yves Mechulam; Emmanuelle Schmitt
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

Review 6.  Looking into laminin receptor: critical discussion regarding the non-integrin 37/67-kDa laminin receptor/RPSA protein.

Authors:  Vincent DiGiacomo; Daniel Meruelo
Journal:  Biol Rev Camb Philos Soc       Date:  2015-01-28

7.  Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center.

Authors:  Cha San Koh; Axel F Brilot; Nikolaus Grigorieff; Andrei A Korostelev
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

8.  The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Authors:  Yaser Hashem; Joachim Frank
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

9.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

10.  Zooming in on eukaryotic translation initiation.

Authors:  Anders Liljas
Journal:  Nat Struct Mol Biol       Date:  2013-10       Impact factor: 15.369

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