Literature DB >> 29959192

Toward a Kinetic Understanding of Eukaryotic Translation.

Masaaki Sokabe1, Christopher S Fraser1.   

Abstract

The eukaryotic translation pathway has been studied for more than four decades, but the molecular mechanisms that regulate each stage of the pathway are not completely defined. This is in part because we have very little understanding of the kinetic framework for the assembly and disassembly of pathway intermediates. Steps of the pathway are thought to occur in the subsecond to second time frame, but most assays to monitor these events require minutes to hours to complete. Understanding translational control in sufficient detail will therefore require the development of assays that can precisely monitor the kinetics of the translation pathway in real time. Here, we describe the translation pathway from the perspective of its kinetic parameters, discuss advances that are helping us move toward the goal of a rigorous kinetic understanding, and highlight some of the challenges that remain.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 29959192      PMCID: PMC6360857          DOI: 10.1101/cshperspect.a032706

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  156 in total

Review 1.  Molecular view of 43 S complex formation and start site selection in eukaryotic translation initiation.

Authors:  Jon R Lorsch; Thomas E Dever
Journal:  J Biol Chem       Date:  2010-05-05       Impact factor: 5.157

2.  The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A.

Authors:  Melanie Weisser; Felix Voigts-Hoffmann; Julius Rabl; Marc Leibundgut; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2013-07-14       Impact factor: 15.369

Review 3.  Nonsense-Mediated mRNA Decay Begins Where Translation Ends.

Authors:  Evangelos D Karousis; Oliver Mühlemann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

4.  EF-P is essential for rapid synthesis of proteins containing consecutive proline residues.

Authors:  Lili K Doerfel; Ingo Wohlgemuth; Christina Kothe; Frank Peske; Henning Urlaub; Marina V Rodnina
Journal:  Science       Date:  2012-12-13       Impact factor: 47.728

Review 5.  Nonsense-mediated mRNA decay in humans at a glance.

Authors:  Tatsuaki Kurosaki; Lynne E Maquat
Journal:  J Cell Sci       Date:  2016-01-19       Impact factor: 5.285

6.  High-resolution view of the yeast meiotic program revealed by ribosome profiling.

Authors:  Gloria A Brar; Moran Yassour; Nir Friedman; Aviv Regev; Nicholas T Ingolia; Jonathan S Weissman
Journal:  Science       Date:  2011-12-22       Impact factor: 47.728

Review 7.  Controlling translation via modulation of tRNA levels.

Authors:  Jeremy E Wilusz
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-04-28       Impact factor: 9.957

8.  The eukaryotic initiation factor eIF4H facilitates loop-binding, repetitive RNA unwinding by the eIF4A DEAD-box helicase.

Authors:  Yingjie Sun; Evrim Atas; Lisa Lindqvist; Nahum Sonenberg; Jerry Pelletier; Amit Meller
Journal:  Nucleic Acids Res       Date:  2012-03-28       Impact factor: 16.971

9.  A unifying model for mTORC1-mediated regulation of mRNA translation.

Authors:  Carson C Thoreen; Lynne Chantranupong; Heather R Keys; Tim Wang; Nathanael S Gray; David M Sabatini
Journal:  Nature       Date:  2012-05-02       Impact factor: 49.962

Review 10.  Ribosome dynamics during decoding.

Authors:  Marina V Rodnina; Niels Fischer; Cristina Maracci; Holger Stark
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

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  18 in total

Review 1.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

2.  Luciferase-based reporter system for in vitro evaluation of elongation rate and processivity of ribosomes.

Authors:  Ivan Kisly; Carolin Kattel; Jaanus Remme; Tiina Tamm
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971

Review 3.  Following the messenger: Recent innovations in live cell single molecule fluorescence imaging.

Authors:  Andreas Schmidt; Guoming Gao; Saffron R Little; Ameya P Jalihal; Nils G Walter
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-01-28       Impact factor: 9.957

4.  eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining.

Authors:  Rosslyn Grosely; Masaaki Sokabe; Christopher P Lapointe; Carlos Alvarado; Jinfan Wang; Elizabeth Montabana; Nancy Villa; Byung-Sik Shin; Thomas E Dever; Christopher S Fraser; Israel S Fernández; Joseph D Puglisi
Journal:  Nature       Date:  2022-06-22       Impact factor: 69.504

5.  mRNA- and factor-driven dynamic variability controls eIF4F-cap recognition for translation initiation.

Authors:  Burak Çetin; Seán E O'Leary
Journal:  Nucleic Acids Res       Date:  2022-08-12       Impact factor: 19.160

6.  Selection of start codon during mRNA scanning in eukaryotic translation initiation.

Authors:  Biswajit Gorai; Thyageshwar Chandran; Ipsita Basu; Prabal K Maiti; Tanweer Hussain
Journal:  Commun Biol       Date:  2022-06-15

7.  RiboDiPA: a novel tool for differential pattern analysis in Ribo-seq data.

Authors:  Keren Li; C Matthew Hope; Xiaozhong A Wang; Ji-Ping Wang
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

8.  Ribosome collisions trigger cis-acting feedback inhibition of translation initiation.

Authors:  Greg Slodkowicz; Zhewang Lin; Szymon Juszkiewicz; Paula Freire-Pritchett; Sew-Yeu Peak-Chew; Ramanujan S Hegde
Journal:  Elife       Date:  2020-07-13       Impact factor: 8.140

9.  Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.

Authors:  Sung-Hui Yi; Valentyn Petrychenko; Jan Erik Schliep; Akanksha Goyal; Andreas Linden; Ashwin Chari; Henning Urlaub; Holger Stark; Marina V Rodnina; Sarah Adio; Niels Fischer
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 16.971

10.  RACK1 on and off the ribosome.

Authors:  Alex G Johnson; Christopher P Lapointe; Jinfan Wang; Nicholas C Corsepius; Junhong Choi; Gabriele Fuchs; Joseph D Puglisi
Journal:  RNA       Date:  2019-04-25       Impact factor: 4.942

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