Literature DB >> 29494255

The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Yaser Hashem1, Joachim Frank2.   

Abstract

Translation initiation in eukaryotes is a highly regulated and rate-limiting process. It results in the assembly and disassembly of numerous transient and intermediate complexes involving over a dozen eukaryotic initiation factors (eIFs). This process culminates in the accommodation of a start codon marking the beginning of an open reading frame at the appropriate ribosomal site. Although this process has been extensively studied by hundreds of groups for nearly half a century, it has been only recently, especially during the last decade, that we have gained deeper insight into the mechanics of the eukaryotic translation initiation process. This advance in knowledge is due in part to the contributions of structural biology, which have shed light on the molecular mechanics underlying the different functions of various eukaryotic initiation factors. In this review, we focus exclusively on the contribution of structural biology to the understanding of the eukaryotic initiation process, a long-standing jigsaw puzzle that is just starting to yield the bigger picture.

Entities:  

Keywords:  43S/48S complexes; cryo-electron microscopy; eukaryotic ribosome; structural biology

Year:  2018        PMID: 29494255      PMCID: PMC6318078          DOI: 10.1146/annurev-biophys-070816-034034

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  152 in total

1.  Structure and interactions of the translation initiation factor eIF1.

Authors:  C M Fletcher; T V Pestova; C U Hellen; G Wagner
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

2.  Structure-function relationships of the intact aIF2alpha subunit from the archaeon Pyrococcus abyssi.

Authors:  Laure Yatime; Emmanuelle Schmitt; Sylvain Blanquet; Yves Mechulam
Journal:  Biochemistry       Date:  2005-06-21       Impact factor: 3.162

3.  The mechanism of an exceptional case of reinitiation after translation of a long ORF reveals why such events do not generally occur in mammalian mRNA translation.

Authors:  Tuija A A Pöyry; Ann Kaminski; Emma J Connell; Christopher S Fraser; Richard J Jackson
Journal:  Genes Dev       Date:  2007-12-01       Impact factor: 11.361

4.  New insights into the interactions of the translation initiation factor 2 from archaea with guanine nucleotides and initiator tRNA.

Authors:  Oleg Nikonov; Elena Stolboushkina; Alexei Nikulin; David Hasenöhrl; Udo Bläsi; Dietmar J Manstein; Roman Fedorov; Maria Garber; Stanislav Nikonov
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

5.  The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A.

Authors:  Melanie Weisser; Felix Voigts-Hoffmann; Julius Rabl; Marc Leibundgut; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2013-07-14       Impact factor: 15.369

Review 6.  Viral IRES RNA structures and ribosome interactions.

Authors:  Jeffrey S Kieft
Journal:  Trends Biochem Sci       Date:  2008-05-28       Impact factor: 13.807

7.  X-Ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding.

Authors:  A Roll-Mecak; C Cao; T E Dever; S K Burley
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

8.  Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES.

Authors:  Margarita Muhs; Tarek Hilal; Thorsten Mielke; Maxim A Skabkin; Karissa Y Sanbonmatsu; Tatyana V Pestova; Christian M T Spahn
Journal:  Mol Cell       Date:  2015-01-15       Impact factor: 17.970

9.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

10.  Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit.

Authors:  Latifa ElAntak; Andreas G Tzakos; Nicolas Locker; Peter J Lukavsky
Journal:  J Biol Chem       Date:  2006-12-26       Impact factor: 5.157

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  14 in total

1.  Aggregation-induced integrated stress response rejuvenates culture-expanded human mesenchymal stem cells.

Authors:  Brent M Bijonowski; Qin Fu; Xuegang Yuan; Jerome Irianto; Yan Li; Samuel C Grant; Teng Ma
Journal:  Biotechnol Bioeng       Date:  2020-07-05       Impact factor: 4.530

2.  eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining.

Authors:  Rosslyn Grosely; Masaaki Sokabe; Christopher P Lapointe; Carlos Alvarado; Jinfan Wang; Elizabeth Montabana; Nancy Villa; Byung-Sik Shin; Thomas E Dever; Christopher S Fraser; Israel S Fernández; Joseph D Puglisi
Journal:  Nature       Date:  2022-06-22       Impact factor: 69.504

3.  Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.

Authors:  Sung-Hui Yi; Valentyn Petrychenko; Jan Erik Schliep; Akanksha Goyal; Andreas Linden; Ashwin Chari; Henning Urlaub; Holger Stark; Marina V Rodnina; Sarah Adio; Niels Fischer
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 16.971

4.  4E-T-bound mRNAs are stored in a silenced and deadenylated form.

Authors:  Felix Räsch; Ramona Weber; Elisa Izaurralde; Cátia Igreja
Journal:  Genes Dev       Date:  2020-04-30       Impact factor: 11.361

5.  Structural Differences in Translation Initiation between Pathogenic Trypanosomatids and Their Mammalian Hosts.

Authors:  Anthony Bochler; Jailson Brito Querido; Terezie Prilepskaja; Heddy Soufari; Angelita Simonetti; Mayara Lucia Del Cistia; Lauriane Kuhn; Aline Rimoldi Ribeiro; Leoš Shivaya Valášek; Yaser Hashem
Journal:  Cell Rep       Date:  2020-12-22       Impact factor: 9.423

Review 6.  Control of translation by eukaryotic mRNA transcript leaders-Insights from high-throughput assays and computational modeling.

Authors:  Christina Akirtava; Charles Joel McManus
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-08-31       Impact factor: 9.957

7.  A complex IRES at the 5'-UTR of a viral mRNA assembles a functional 48S complex via an uAUG intermediate.

Authors:  Ritam Neupane; Vera P Pisareva; Carlos F Rodriguez; Andrey V Pisarev; Israel S Fernández
Journal:  Elife       Date:  2020-04-14       Impact factor: 8.140

8.  Adapted formaldehyde gradient cross-linking protocol implicates human eIF3d and eIF3c, k and l subunits in the 43S and 48S pre-initiation complex assembly, respectively.

Authors:  Anna Herrmannová; Terezie Prilepskaja; Susan Wagner; Darina Šikrová; Jakub Zeman; Kristýna Poncová; Leoš Shivaya Valášek
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

9.  Long-range interdomain communications in eIF5B regulate GTP hydrolysis and translation initiation.

Authors:  Bridget Y Huang; Israel S Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-03       Impact factor: 11.205

10.  Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex.

Authors:  Jinfan Wang; Jing Wang; Byung-Sik Shin; Joo-Ran Kim; Thomas E Dever; Joseph D Puglisi; Israel S Fernández
Journal:  Nat Commun       Date:  2020-10-06       Impact factor: 14.919

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