Literature DB >> 25664723

Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex.

Christopher H S Aylett1, Daniel Boehringer1, Jan P Erzberger1, Tanja Schaefer1, Nenad Ban1.   

Abstract

Eukaryotic translation initiation requires cooperative assembly of a large protein complex at the 40S ribosomal subunit. We have resolved a budding yeast initiation complex by cryo-EM, allowing placement of prior structures of eIF1, eIF1A, eIF3a, eIF3b and eIF3c. Our structure highlights differences in initiation-complex binding to the ribosome compared to that of mammalian eIF3, demonstrates a direct contact between eIF3j and eIF1A and reveals the network of interactions between eIF3 subunits.

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Year:  2015        PMID： 25664723     DOI： 10.1038/nsmb.2963

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


  40 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

3.  eIF3a cooperates with sequences 5' of uORF1 to promote resumption of scanning by post-termination ribosomes for reinitiation on GCN4 mRNA.

Authors:  Béla Szamecz; Edit Rutkai; Lucie Cuchalová; Vanda Munzarová; Anna Herrmannová; Klaus H Nielsen; Laxminarayana Burela; Alan G Hinnebusch; Leos Valásek
Journal:  Genes Dev       Date:  2008-09-01       Impact factor: 11.361

4.  Interactions of eukaryotic translation initiation factor 3 (eIF3) subunit NIP1/c with eIF1 and eIF5 promote preinitiation complex assembly and regulate start codon selection.

Authors:  Leos Valásek; Klaus H Nielsen; Fan Zhang; Christie A Fekete; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

5.  Spectrin domain of eukaryotic initiation factor 3a is the docking site for formation of the a:b:i:g subcomplex.

Authors:  Zizheng Dong; Jing Qi; Hui Peng; Jianguo Liu; Jian-Ting Zhang
Journal:  J Biol Chem       Date:  2013-08-06       Impact factor: 5.157

Review 6.  Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.

Authors:  Alexander Leitner; Thomas Walzthoeni; Abdullah Kahraman; Franz Herzog; Oliver Rinner; Martin Beck; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2010-03-31       Impact factor: 5.911

7.  The indispensable N-terminal half of eIF3j/HCR1 cooperates with its structurally conserved binding partner eIF3b/PRT1-RRM and with eIF1A in stringent AUG selection.

Authors:  Latifa Elantak; Susan Wagner; Anna Herrmannová; Martina Karásková; Edit Rutkai; Peter J Lukavsky; Leos Valásek
Journal:  J Mol Biol       Date:  2010-01-11       Impact factor: 5.469

8.  Architecture of human translation initiation factor 3.

Authors:  Jordi Querol-Audi; Chaomin Sun; Jacob M Vogan; M Duane Smith; Yu Gu; Jamie H D Cate; Eva Nogales
Journal:  Structure       Date:  2013-04-25       Impact factor: 5.006

9.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

10.  Small ribosomal protein RPS0 stimulates translation initiation by mediating 40S-binding of eIF3 via its direct contact with the eIF3a/TIF32 subunit.

Authors:  Tomáš Kouba; István Dányi; Stanislava Gunišová; Vanda Munzarová; Vladislava Vlčková; Lucie Cuchalová; Andreas Neueder; Philipp Milkereit; Leoš Shivaya Valášek
Journal:  PLoS One       Date:  2012-07-05       Impact factor: 3.240
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  52 in total

Review 1.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

2.  Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.

Authors:  André Heuer; Milan Gerovac; Christian Schmidt; Simon Trowitzsch; Anne Preis; Peter Kötter; Otto Berninghausen; Thomas Becker; Roland Beckmann; Robert Tampé
Journal:  Nat Struct Mol Biol       Date:  2017-04-03       Impact factor: 15.369

Review 3.  Eukaryotic aspects of translation initiation brought into focus.

Authors:  Christopher H S Aylett; Nenad Ban
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

4.  Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.

Authors:  Alina Selega; Christel Sirocchi; Ira Iosub; Sander Granneman; Guido Sanguinetti
Journal:  Nat Methods       Date:  2016-11-07       Impact factor: 28.547

Review 5.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

6.  Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii.

Authors:  Zhifei Li; Qiang Guo; Lvqin Zheng; Yongsheng Ji; Yi-Ting Xie; De-Hua Lai; Zhao-Rong Lun; Xun Suo; Ning Gao
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

7.  Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.

Authors:  Sergey Melnikov; Kasidet Manakongtreecheep; Dieter Söll
Journal:  Mol Biol Evol       Date:  2018-07-01       Impact factor: 16.240

8.  The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Authors:  Yaser Hashem; Joachim Frank
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

9.  Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5.

Authors:  Eiji Obayashi; Rafael E Luna; Takashi Nagata; Pilar Martin-Marcos; Hiroyuki Hiraishi; Chingakham Ranjit Singh; Jan Peter Erzberger; Fan Zhang; Haribabu Arthanari; Jacob Morris; Riccardo Pellarin; Chelsea Moore; Ian Harmon; Evangelos Papadopoulos; Hisashi Yoshida; Mahmoud L Nasr; Satoru Unzai; Brytteny Thompson; Eric Aube; Samantha Hustak; Florian Stengel; Eddie Dagraca; Asokan Ananbandam; Philip Gao; Takeshi Urano; Alan G Hinnebusch; Gerhard Wagner; Katsura Asano
Journal:  Cell Rep       Date:  2017-03-14       Impact factor: 9.423

Review 10.  eIF3: a factor for human health and disease.

Authors:  Andreia Gomes-Duarte; Rafaela Lacerda; Juliane Menezes; Luísa Romão
Journal:  RNA Biol       Date:  2017-11-13       Impact factor: 4.652
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