Literature DB >> 23845994

The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.

Barbara Härtel1, Anja Zehrmann1, Daniil Verbitskiy1, Mizuki Takenaka1.   

Abstract

Mitochondrial RNA editing factor 12 (MEF12) was identified in a screen for editing defects of a chemically mutated plant population in Arabidopsis thaliana. The MEF12 editing protein is required for the C to U change of nucleotide nad5-374. The MEF12 polypeptide is characterized by an exceptionally long stretch of 25 pentatricopeptide repeats (PPR) and a C-terminal extension domain. Editing is lost in mutant plants with a stop codon in the extending element. A T-DNA insertion substituting the 10 C-terminal amino acids of the extension domain reduces RNA editing to about 20% at the target site in a mutant plant. These results support the importance of the full-length extension module for functional RNA editing in plant mitochondria.

Entities:  

Keywords:  E-domain; MEF12; PPR protein; RNA editing factor; plant mitochondria

Mesh:

Substances:

Year:  2013        PMID: 23845994      PMCID: PMC3858437          DOI: 10.4161/rna.25484

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  42 in total

1.  RNA editing competence of trans-factor MEF1 is modulated by ecotype-specific differences but requires the DYW domain.

Authors:  Anja Zehrmann; Daniil Verbitskiy; Barbara Härtel; Axel Brennicke; Mizuki Takenaka
Journal:  FEBS Lett       Date:  2010-09-07       Impact factor: 4.124

Review 2.  Plant RNA editing.

Authors:  Anne-Laure Chateigner-Boutin; Ian Small
Journal:  RNA Biol       Date:  2010-03-26       Impact factor: 4.652

3.  Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Authors:  Mizuki Takenaka; Daniil Verbitskiy; Anja Zehrmann; Axel Brennicke
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

4.  Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

Authors:  Sota Fujii; Charles S Bond; Ian D Small
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-10       Impact factor: 11.205

5.  MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis.

Authors:  Mizuki Takenaka
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

6.  Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.

Authors:  Kenji Okuda; Anne-Laure Chateigner-Boutin; Takahiro Nakamura; Etienne Delannoy; Mamoru Sugita; Fumiyoshi Myouga; Reiko Motohashi; Kazuo Shinozaki; Ian Small; Toshiharu Shikanai
Journal:  Plant Cell       Date:  2009-01-30       Impact factor: 11.277

7.  Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.

Authors:  Sung-Ryul Kim; Jung-Il Yang; Sunok Moon; Choong-Hwan Ryu; Kyungsook An; Kyung-Me Kim; Jieun Yim; Gynheung An
Journal:  Plant J       Date:  2009-05-04       Impact factor: 6.417

8.  AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.

Authors:  Qing-Bo Yu; Yan Jiang; Kang Chong; Zhong-Nan Yang
Journal:  Plant J       Date:  2009-05-28       Impact factor: 6.417

9.  The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana.

Authors:  Daniil Verbitskiy; Anja Zehrmann; Johannes A van der Merwe; Axel Brennicke; Mizuki Takenaka
Journal:  Plant J       Date:  2009-11-16       Impact factor: 6.417

Review 10.  Architecture of the PPR gene family in the moss Physcomitrella patens.

Authors:  Mamoru Sugita; Mizuho Ichinose; Mizuki Ide; Chieko Sugita
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

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  7 in total

Review 1.  Parallel Evolution and Lineage-Specific Expansion of RNA Editing in Ctenophores.

Authors:  Andrea B Kohn; Rachel S Sanford; Masa-aki Yoshida; Leonid L Moroz
Journal:  Integr Comp Biol       Date:  2015-06-18       Impact factor: 3.326

Review 2.  Molecular and Functional Diversity of RNA Editing in Plant Mitochondria.

Authors:  Wei Tang; Caroline Luo
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

3.  Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria.

Authors:  Damien Guillaumot; Mauricio Lopez-Obando; Kevin Baudry; Alexandra Avon; Guillem Rigaill; Andéol Falcon de Longevialle; Benjamin Broche; Mizuki Takenaka; Richard Berthomé; Geert De Jaeger; Etienne Delannoy; Claire Lurin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

4.  Deficient plastidic fatty acid synthesis triggers cell death by modulating mitochondrial reactive oxygen species.

Authors:  Jian Wu; Yuefeng Sun; Yannan Zhao; Jian Zhang; Lilan Luo; Meng Li; Jinlong Wang; Hong Yu; Guifu Liu; Liusha Yang; Guosheng Xiong; Jian-Min Zhou; Jianru Zuo; Yonghong Wang; Jiayang Li
Journal:  Cell Res       Date:  2015-04-24       Impact factor: 25.617

Review 5.  RNA Editing and Its Molecular Mechanism in Plant Organelles.

Authors:  Mizuho Ichinose; Mamoru Sugita
Journal:  Genes (Basel)       Date:  2016-12-23       Impact factor: 4.096

6.  The novel E-subgroup pentatricopeptide repeat protein DEK55 is responsible for RNA editing at multiple sites and for the splicing of nad1 and nad4 in maize.

Authors:  Ru Chang Ren; Xu Wei Yan; Ya Jie Zhao; Yi Ming Wei; Xiaoduo Lu; Jie Zang; Jia Wen Wu; Guang Ming Zheng; Xin Hua Ding; Xian Sheng Zhang; Xiang Yu Zhao
Journal:  BMC Plant Biol       Date:  2020-12-09       Impact factor: 4.215

7.  Genome Resequencing, Improvement of Variant Calling, and Population Genomic Analyses Provide Insights into the Seedlessness in the Genus Vitis.

Authors:  Myung-Shin Kim; Youn Young Hur; Ji Hong Kim; Soon-Chun Jeong
Journal:  G3 (Bethesda)       Date:  2020-09-02       Impact factor: 3.154

  7 in total

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