Literature DB >> 28760958

Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria.

Damien Guillaumot1,2, Mauricio Lopez-Obando1,2, Kevin Baudry1,2, Alexandra Avon1,2, Guillem Rigaill1,2,3, Andéol Falcon de Longevialle1,2, Benjamin Broche1,2, Mizuki Takenaka4, Richard Berthomé1,2, Geert De Jaeger5,6, Etienne Delannoy1,2, Claire Lurin7,2.   

Abstract

RNA editing is converting hundreds of cytosines into uridines during organelle gene expression of land plants. The pentatricopeptide repeat (PPR) proteins are at the core of this posttranscriptional RNA modification. Even if a PPR protein defines the editing site, a DYW domain of the same or another PPR protein is believed to catalyze the deamination. To give insight into the organelle RNA editosome, we performed tandem affinity purification of the plastidial CHLOROPLAST BIOGENESIS 19 (CLB19) PPR editing factor. Two PPR proteins, dually targeted to mitochondria and chloroplasts, were identified as potential partners of CLB19. These two proteins, a P-type PPR and a member of a small PPR-DYW subfamily, were shown to interact in yeast. Insertional mutations resulted in embryo lethality that could be rescued by embryo-specific complementation. A transcriptome analysis of these complemented plants showed major editing defects in both organelles with a very high PPR type specificity, indicating that the two proteins are core members of E+-type PPR editosomes.

Entities:  

Keywords:  RNA editing; organelles; pentatricopeptide repeat

Mesh:

Substances:

Year:  2017        PMID: 28760958      PMCID: PMC5565446          DOI: 10.1073/pnas.1705780114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  80 in total

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Authors:  Shifeng Cheng; Bernard Gutmann; Xiao Zhong; Yongtao Ye; Mark F Fisher; Fengqi Bai; Ian Castleden; Yue Song; Bo Song; Jiaying Huang; Xin Liu; Xun Xu; Boon L Lim; Charles S Bond; Siu-Ming Yiu; Ian Small
Journal:  Plant J       Date:  2016-02       Impact factor: 6.417

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Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

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Journal:  Plant Cell       Date:  2016-08-19       Impact factor: 11.277

5.  Contiguous RNA editing sites in the mitochondrial nad1 transcript of Arabidopsis thaliana are recognized by different proteins.

Authors:  Anita Arenas-M; Mizuki Takenaka; Sebastián Moreno; Isabel Gómez; Xavier Jordana
Journal:  FEBS Lett       Date:  2013-02-14       Impact factor: 4.124

6.  An RNA recognition motif-containing protein is required for plastid RNA editing in Arabidopsis and maize.

Authors:  Tao Sun; Arnaud Germain; Ludovic Giloteaux; Kamel Hammani; Alice Barkan; Maureen R Hanson; Stéphane Bentolila
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

7.  Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.

Authors:  Claire Lurin; Charles Andrés; Sébastien Aubourg; Mohammed Bellaoui; Frédérique Bitton; Clémence Bruyère; Michel Caboche; Cédrig Debast; José Gualberto; Beate Hoffmann; Alain Lecharny; Monique Le Ret; Marie-Laure Martin-Magniette; Hakim Mireau; Nemo Peeters; Jean-Pierre Renou; Boris Szurek; Ludivine Taconnat; Ian Small
Journal:  Plant Cell       Date:  2004-07-21       Impact factor: 11.277

8.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

9.  MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

Authors:  Oliver Thimm; Oliver Bläsing; Yves Gibon; Axel Nagel; Svenja Meyer; Peter Krüger; Joachim Selbig; Lukas A Müller; Seung Y Rhee; Mark Stitt
Journal:  Plant J       Date:  2004-03       Impact factor: 6.417

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Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  30 in total

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Authors:  Jingjing Jiang; Xin Chai; Nikolay Manavski; Rosalind Williams-Carrier; Baoye He; Andreas Brachmann; Daili Ji; Min Ouyang; Yini Liu; Alice Barkan; Jörg Meurer; Lixin Zhang; Wei Chi
Journal:  Plant Cell       Date:  2019-04-08       Impact factor: 11.277

Review 2.  Rather rule than exception? How to evaluate the relevance of dual protein targeting to mitochondria and chloroplasts.

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Journal:  Photosynth Res       Date:  2018-06-26       Impact factor: 3.573

3.  Control of Retrograde Signaling by Rapid Turnover of GENOMES UNCOUPLED1.

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Journal:  Plant Physiol       Date:  2018-01-24       Impact factor: 8.340

4.  Multiple PPR protein interactions are involved in the RNA editing system in Arabidopsis mitochondria and plastids.

Authors:  Nuria Andrés-Colás; Qiang Zhu; Mizuki Takenaka; Bert De Rybel; Dolf Weijers; Dominique Van Der Straeten
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

5.  Transformation of nad7 into the nuclear genome rescues the slow growth3 mutant in Arabidopsis.

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6.  One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Authors:  Bastian Oldenkott; Matthias Burger; Anke-Christiane Hein; Anja Jörg; Jennifer Senkler; Hans-Peter Braun; Volker Knoop; Mizuki Takenaka; Mareike Schallenberg-Rüdinger
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

7.  Adenylates regulate Arabidopsis plastidial thioredoxin activities through the binding of a CBS domain protein.

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Journal:  Plant Physiol       Date:  2022-08-01       Impact factor: 8.005

8.  GRP23 plays a core role in E-type editosomes via interacting with MORFs and atypical PPR-DYWs in Arabidopsis mitochondria.

Authors:  Yan-Zhuo Yang; Xin-Yuan Liu; Jiao-Jiao Tang; Yong Wang; Chunhui Xu; Bao-Cai Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

9.  The dual-targeted RNA editing factor AEF1 is universally conserved among angiosperms and reveals only minor adaptations upon loss of its chloroplast or its mitochondrial target.

Authors:  Anke Hein; Sarah Brenner; Monika Polsakiewicz; Volker Knoop
Journal:  Plant Mol Biol       Date:  2019-12-03       Impact factor: 4.076

10.  A synthetic RNA editing factor edits its target site in chloroplasts and bacteria.

Authors:  Santana Royan; Bernard Gutmann; Catherine Colas des Francs-Small; Suvi Honkanen; Jason Schmidberger; Ashley Soet; Yueming Kelly Sun; Lilian Vincis Pereira Sanglard; Charles S Bond; Ian Small
Journal:  Commun Biol       Date:  2021-05-10
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